The overarching goal of this renewal application is to understand the mechanisms of age-related genomic instability and develop strategies to counteract it. In the past funding period we demonstrated that DNA double- strand break (DSB) repair becomes less efficient with age. Next, we showed that SIRT6 is an upstream regulator of DSB repair and overexpression of SIRT6 in senescent cells rescues the repair decline. Additionally, we found that SIRT6 maintains genome stability by silencing LINE1 transposons. Next, we set out to understand SIRT6 regulation. We discovered that JNK phosphorylates SIRT6 on S10 and this phosphorylation stimulates SIRT6 function in DSB repair. Recently, we generated knock-in mice with non- phosphorylatable SIRT6 S10A and phospho-mimetic S10E mutations. Our preliminary data suggest that S10E mice are more resistant to stress and have lower levels of DNA damage. Furthermore, we identified that SIRT6 is phosphorylated by AMPK on T294 and this modification enhances SIRT6 function in DSB repair. Intriguingly, AMPK phosphorylation consensus site is only found in long-lived mammals including human, but is absent in short-lived mammals such as mice. Furthermore, our preliminary data suggest that SIRT6 mono-ADP ribosylates AMPK? on K60, located very close to T172 activation site, possibly directly regulating AMPK activity. This application seeks to examine how activating SIRT6 affects aging and genome stability using SIRT6 S10 mutant mice and dissect the cross talk between SIRT6 and AMPK. This application will address the following questions: Do mice with constitutively active SIRT6 live longer? Does constitutive activation of SIRT6 have negative effect on fitness? How does activation of SIRT6 affect silencing of LINE1s? What is the function of SIRT6 phosphorylaton by AMPK? What is the function of AMPK mono-ADP ribosylation by SIRT6? Aim 1: Examine in vivo function of SIRT6 S10 phosphorylation in the context of aging and stress.
Sub aim 1 a. We will test the hypothesis that mice with activated SIRT6 (S10E) are more resistant to oxidative stress and longer-lived than the WT or S10A mice.
This aim will also test if there are fitness trade-offs associated with constitutively activated SIRT6 and upregulated DNA repair.
Sub aim 1 b. We will examine activation of LINE1 transposons in the WT, SIRT6 S10A and SIRT6 S10E mice. Our data show that SIRT6 is required for silencing of L1 transposons, while S10 phosphorylation recruits SIRT6 to DNA breaks. Here we will test whether SIRT6 S10 variants lead to higher or lower transposon activity during stress and aging.
Aim 2 : Examine the SIRT6-AMPK signaling axis and the function of SIRT6 T294 phosphorylation. Our hypothesis is that SIRT6-AMPK axis regulates DNA repair in response to nutrition status.
Sub aim 2 a. We will examine the effect of SIRT6 phosphorylation by AMPK on SIRT6-mediated DNA repair and control of glycolytic genes. We will compare the SIRT6-AMPK axis in mouse and in human.
Sub aim 2 b. We will examine the effect of mono-ADP-ribosylation of AMPK by SIRT6 on AMPK activity in vitro and in vivo.

Public Health Relevance

Genomes become unstable with age leading to functional decline of organs and tissues and increased incidence of cancer. This occurs because DNA repair machinery becomes less efficient with age. We found that a protein named SIRT6 stimulates DNA repair. Our goal is to understand how SIRT6 is regulated and whether activating SIRT6 prevents age-related genomic instability. In the long term, these studies will help develop novel ways to stabilize the aging genome, and prevent cancer.

Agency
National Institute of Health (NIH)
Institute
National Institute on Aging (NIA)
Type
Research Project (R01)
Project #
5R01AG027237-13
Application #
9936095
Study Section
Cellular Mechanisms in Aging and Development Study Section (CMAD)
Program Officer
Guo, Max
Project Start
2006-07-01
Project End
2023-05-31
Budget Start
2020-06-01
Budget End
2021-05-31
Support Year
13
Fiscal Year
2020
Total Cost
Indirect Cost
Name
University of Rochester
Department
Biology
Type
Schools of Arts and Sciences
DUNS #
041294109
City
Rochester
State
NY
Country
United States
Zip Code
14627
Seluanov, Andrei; Gladyshev, Vadim N; Vijg, Jan et al. (2018) Mechanisms of cancer resistance in long-lived mammals. Nat Rev Cancer 18:433-441
Tan, Li; Ke, Zhonghe; Tombline, Gregory et al. (2017) Naked Mole Rat Cells Have a Stable Epigenome that Resists iPSC Reprogramming. Stem Cell Reports 9:1721-1734
Tian, Xiao; Seluanov, Andrei; Gorbunova, Vera (2017) Molecular Mechanisms Determining Lifespan in Short- and Long-Lived Species. Trends Endocrinol Metab 28:722-734
Gorbunova, Vera; Seluanov, Andrei (2016) DNA double strand break repair, aging and the chromatin connection. Mutat Res 788:2-6
Hewitt, Graeme; Carroll, Bernadette; Sarallah, Rezazadeh et al. (2016) SQSTM1/p62 mediates crosstalk between autophagy and the UPS in DNA repair. Autophagy 12:1917-1930
Koschmann, Carl; Calinescu, Anda-Alexandra; Nunez, Felipe J et al. (2016) ATRX loss promotes tumor growth and impairs nonhomologous end joining DNA repair in glioma. Sci Transl Med 8:328ra28
Gorbunova, Vera; Rezazadeh, Sarallah; Seluanov, Andrei (2016) Dangerous Entrapment for NRF2. Cell 165:1312-1313
Patrick, Alison; Seluanov, Michael; Hwang, Chaewon et al. (2016) Sensitivity of primary fibroblasts in culture to atmospheric oxygen does not correlate with species lifespan. Aging (Albany NY) 8:841-7
Ma, Siming; Upneja, Akhil; Galecki, Andrzej et al. (2016) Cell culture-based profiling across mammals reveals DNA repair and metabolism as determinants of species longevity. Elife 5:
Van Meter, Michael; Simon, Matthew; Tombline, Gregory et al. (2016) JNK Phosphorylates SIRT6 to Stimulate DNA Double-Strand Break Repair in Response to Oxidative Stress by Recruiting PARP1 to DNA Breaks. Cell Rep 16:2641-2650

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