The overall goal of this proposed research is to contribute to the molecular understanding of the mechanism of genetic recombination. The approach will involve the investigation of the physical, biochemical, and enzymatic properties of purified proteins which are known to be involved in the biological recombination process. The focus of these studies will be on the E. coli recA protein, and the interaction with its nucleic acid substrates, as well as the interaction with other proteins involved in recombination, such as SSB protein, recBC, and DNA helicases. The overall objective of these studies is to understand, at the physical mechanistic level, how these proteins interact with each other and with their nucleic acid substrates to produce a recombinant DNA molecule. The approaches to be used include physical investigations of the structural equilibrium and kinetic aspects of binding of recA protein to nucleic acid substrates and of the mechanism of recA protein catalyzed reactions such as DNA renaturation and DNA strand assimilation; biochemical studies of mutant recA protein variants, of proteolytic fragments of recA protein and of truncated recA gene products; and physical and enzymatic studies of the interaction of recA protein with other proteins such as SSB protein, recBC, and DNA helicases.

Agency
National Institute of Health (NIH)
Institute
National Institute of Allergy and Infectious Diseases (NIAID)
Type
Research Project (R01)
Project #
2R01AI018987-04
Application #
3128391
Study Section
Microbial Physiology and Genetics Subcommittee 2 (MBC)
Project Start
1982-04-01
Project End
1990-03-31
Budget Start
1985-04-01
Budget End
1986-03-31
Support Year
4
Fiscal Year
1985
Total Cost
Indirect Cost
Name
Northwestern University at Chicago
Department
Type
School of Medicine & Dentistry
DUNS #
005436803
City
Chicago
State
IL
Country
United States
Zip Code
60611
Wu, Yun; Kantake, Noriko; Sugiyama, Tomohiko et al. (2008) Rad51 protein controls Rad52-mediated DNA annealing. J Biol Chem 283:14883-92
Seitz, Erica M; Kowalczykowski, Stephen C (2006) Human Rad51 protein displays enhanced homologous pairing of DNA sequences resembling those at genetically unstable loci. Nucleic Acids Res 34:2847-52
Wu, Yun; Sugiyama, Tomohiko; Kowalczykowski, Stephen C (2006) DNA annealing mediated by Rad52 and Rad59 proteins. J Biol Chem 281:15441-9
Kantake, Noriko; Sugiyama, Tomohiko; Kolodner, Richard D et al. (2003) The recombination-deficient mutant RPA (rfa1-t11) is displaced slowly from single-stranded DNA by Rad51 protein. J Biol Chem 278:23410-7
New, James H; Kowalczykowski, Stephen C (2002) Rad52 protein has a second stimulatory role in DNA strand exchange that complements replication protein-A function. J Biol Chem 277:26171-6
Kantake, Noriko; Madiraju, Murty V V M; Sugiyama, Tomohiko et al. (2002) Escherichia coli RecO protein anneals ssDNA complexed with its cognate ssDNA-binding protein: A common step in genetic recombination. Proc Natl Acad Sci U S A 99:15327-32
Solinger, J A; Lutz, G; Sugiyama, T et al. (2001) Rad54 protein stimulates heteroduplex DNA formation in the synaptic phase of DNA strand exchange via specific interactions with the presynaptic Rad51 nucleoprotein filament. J Mol Biol 307:1207-21
Mazin, A V; Bornarth, C J; Solinger, J A et al. (2000) Rad54 protein is targeted to pairing loci by the Rad51 nucleoprotein filament. Mol Cell 6:583-92
Mazin, A V; Zaitseva, E; Sung, P et al. (2000) Tailed duplex DNA is the preferred substrate for Rad51 protein-mediated homologous pairing. EMBO J 19:1148-56
Kowalczykowski, S C (2000) Initiation of genetic recombination and recombination-dependent replication. Trends Biochem Sci 25:156-65

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