Cells infected with the filamentous bacteriophage fd (or M13) synthesize many copies of the protein coded for by the viral gene 8 as the 73-residue procoat protein with its 23-residue leader sequence. The procoat protein is inserted in the cell membrane where it is cleaved by leader peptidase to the 50-residue coat protein which is stored in the membrane prior to being assembled to form the virus particles. The procoat and coat proteins are among the most favorable experimental systems for biophysical investigations of leader sequences and membrane-protein interactions, since: they are small, can be prepared in large quantities, can be labelled with stable isotopes, can be altered by site-specific mutagenesis, and many results have been obtained from the on-going investigations. The structure and dynamics of the membrane bound forms of the coat protein and its precursor, procoat protein, will be described by solution NMR studies of these proteins in detergent micelles and by solid state NMR studies of these proteins in phospholipid bilayers. The procoat protein will be studied in aqueous solution as well. This research will provide detailed descriptions of the coat protein during several stages of the lifecycle of the virus, thereby contributing to the understanding of processes important to molecular biology, where the mechanisms of packaging of DNA by protein and the roles of leader sequence in controlling protein processing and compartmentalization are topics of intense current interest.

Agency
National Institute of Health (NIH)
Institute
National Institute of Allergy and Infectious Diseases (NIAID)
Type
Research Project (R01)
Project #
5R01AI020770-08
Application #
3130584
Study Section
Biophysical Chemistry Study Section (BBCB)
Project Start
1984-12-01
Project End
1992-11-30
Budget Start
1991-12-01
Budget End
1992-11-30
Support Year
8
Fiscal Year
1992
Total Cost
Indirect Cost
Name
University of Pennsylvania
Department
Type
Schools of Arts and Sciences
DUNS #
042250712
City
Philadelphia
State
PA
Country
United States
Zip Code
19104
Kim, Y; Valentine, K; Opella, S J et al. (1998) Solid-state NMR studies of the membrane-bound closed state of the colicin E1 channel domain in lipid bilayers. Protein Sci 7:342-8
Marassi, F M; Ramamoorthy, A; Opella, S J (1997) Complete resolution of the solid-state NMR spectrum of a uniformly 15N-labeled membrane protein in phospholipid bilayers. Proc Natl Acad Sci U S A 94:8551-6
Almeida, F C; Opella, S J (1997) fd coat protein structure in membrane environments: structural dynamics of the loop between the hydrophobic trans-membrane helix and the amphipathic in-plane helix. J Mol Biol 270:481-95
Gesell, J; Zasloff, M; Opella, S J (1997) Two-dimensional 1H NMR experiments show that the 23-residue magainin antibiotic peptide is an alpha-helix in dodecylphosphocholine micelles, sodium dodecylsulfate micelles, and trifluoroethanol/water solution. J Biomol NMR 9:127-35
Almeida, F C; Opella, S J (1997) Measurement of 1H T1 rho in a uniformly 15N-labeled protein in solution with heteronuclear two-dimensional spectroscopy. J Magn Reson 124:509-11
Klassen, R B; Opella, S J (1997) NMR studies of peptides and proteins associated with membranes. Methods Mol Biol 60:271-97
Howard, K P; Opella, S J (1996) High-resolution solid-state NMR spectra of integral membrane proteins reconstituted into magnetically oriented phospholipid bilayers. J Magn Reson B 112:91-4
Bechinger, B; Gierasch, L M; Montal, M et al. (1996) Orientations of helical peptides in membrane bilayers by solid state NMR spectroscopy. Solid State Nucl Magn Reson 7:185-91
Tobias, D J; Gesell, J; Klein, M L et al. (1995) A simple protocol for identification of helical and mobile residues in membrane proteins. J Mol Biol 253:391-5
Opella, S J; Kim, Y; McDonnell, P (1994) Experimental nuclear magnetic resonance studies of membrane proteins. Methods Enzymol 239:536-60

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