A consequence of the extraordinary MHC polymorphism in human populations is that individuality is seen in the immune response to all antigens. For HLA class I genes the polymorphism determines antigen specificity of cytolytic lymphocyte responses to tumors, intracellular infections and allogeneic tissue transplants. Whereas model studies in mice can selectively focus on the small number of MHC types represented by the inbred strains, the medical importance of an individual patients HLA type necessitates an inclusive approach to the study of humans, particularly in a society consisting of racially mixed populations of diverse geographical origin. Research supported by this project in the last 10 years has worked towards defining the structural diversity of HLA class I polymorphism in human populations, its functional import and the insight it can provide regarding the history of the human immune system. The success of the endeavor has revealed inadequacies in clinical tissue typing and catalyzed development of more accurate and precise DNA-based methods. In turn the application of such methods has revealed a previously undiscovered type of HLA-A allele which though genotypically present is not expressed. Identification of such """"""""null"""""""" alleles and distinguishing them from their functional counterparts will be important in matching donors and recipients for transplantation. Analogous loss of HLA-A expression is a common feature of human tumors, a phenomenon believed to result from selection of variants by immune pressure from cytolytic lymphocytes. The proposed research will determine the cause of HLA class I down regulation in inherited HLA class I null alleles (Aim l) and their somatically altered counterparts in tumors (Aim 2), and test the hypothesis that similar processes are at work, which result from pressures of immunity. Also under test will be the hypothesis that HLA-A is paru~cularly prone to inactivation, perhaps as a consequence of its age and infiexibility compared to HLA-B. Preliminary study of HLA-A null alleles and analysis of the low expression of HLA-C both point to the importance of post transcriptional regulation of mRNA in controlling the expression and function of HLA class I genes. Of potential importance are the divergent spice sites flanking exon 3. The experiments of Aim 3 will focus on understanding the mechanisms controlling HLA class I mRNA splicing and the levels of cytoplasmic mRNA. The hypothesis that exon 3 contains an enhancer of mRNA splicing will be tested.

Agency
National Institute of Health (NIH)
Institute
National Institute of Allergy and Infectious Diseases (NIAID)
Type
Research Project (R01)
Project #
5R01AI024258-15
Application #
6373103
Study Section
Immunobiology Study Section (IMB)
Program Officer
Kraemer, Kristy A
Project Start
1991-09-30
Project End
2003-04-30
Budget Start
2001-05-01
Budget End
2003-04-30
Support Year
15
Fiscal Year
2001
Total Cost
$232,384
Indirect Cost
Name
Stanford University
Department
Biology
Type
Schools of Medicine
DUNS #
800771545
City
Stanford
State
CA
Country
United States
Zip Code
94305
Norman, Paul J; Norberg, Steven J; Guethlein, Lisbeth A et al. (2017) Sequences of 95 human MHC haplotypes reveal extreme coding variation in genes other than highly polymorphic HLA class I and II. Genome Res 27:813-823
Wroblewski, Emily E; Guethlein, Lisbeth A; Norman, Paul J et al. (2017) Bonobos Maintain Immune System Diversity with Three Functional Types of MHC-B. J Immunol 198:3480-3493
Guethlein, Lisbeth A; Norman, Paul J; Heijmans, Corinne M C et al. (2017) Two Orangutan Species Have Evolved Different KIR Alleles and Haplotypes. J Immunol 198:3157-3169
Norman, Paul J; Hollenbach, Jill A; Nemat-Gorgani, Neda et al. (2016) Defining KIR and HLA Class I Genotypes at Highest Resolution via High-Throughput Sequencing. Am J Hum Genet 99:375-91
Abi-Rached, Laurent; Guethlein, Lisbeth A; Norman, Paul J et al. (2015) Chimpanzee susceptibility to hepatitis C virus infection correlates with presence of Pt-KIR3DS2 and Pt-KIR2DL9: paired activating and inhibitory natural killer cell receptors. Immunogenetics 67:625-8
Wroblewski, Emily E; Norman, Paul J; Guethlein, Lisbeth A et al. (2015) Signature Patterns of MHC Diversity in Three Gombe Communities of Wild Chimpanzees Reflect Fitness in Reproduction and Immune Defense against SIVcpz. PLoS Biol 13:e1002144
Guethlein, Lisbeth A; Norman, Paul J; Hilton, Hugo G et al. (2015) Co-evolution of MHC class I and variable NK cell receptors in placental mammals. Immunol Rev 267:259-82
Parham, Peter; Moffett, Ashley (2013) Variable NK cell receptors and their MHC class I ligands in immunity, reproduction and human evolution. Nat Rev Immunol 13:133-44
Hammond, John A; Guethlein, Lisbeth A; Norman, Paul J et al. (2012) Natural selection on marine carnivores elaborated a diverse family of classical MHC class I genes exhibiting haplotypic gene content variation and allelic polymorphism. Immunogenetics 64:915-33
Parham, P; Norman, P J; Abi-Rached, L et al. (2012) Review: Immunogenetics of human placentation. Placenta 33 Suppl:S71-80

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