The overall goal of this proposal is to determine if lentiviral variants that emerge when AIDS develops in the host are more pathogenic than viruses present in the early, asymptomatic stages of infection. If so, we will define the molecular determinants of pathogenicity, and we will begin to study the biochemical basis for differences in phenotype between the early and late variants. HIV and SIV are lentivirus that infect and cause AIDS in humans and macaques, respectively. During the course of both human and simian AIDS, the viruses isolated from individuals late in infection tend to be more virulent to cells in culture than viruses in the early stages of infection. the extracellular envelope (env) glycoprotein is a key determinant of this change in phenotype. Simian AIDS has been experimentally induced with molecularly cloned SIV, providing a system to study virus variation as it relates to disease progression starting from a genetically defined virus. We have identified two regions of extensive variation in the SIV envelope gene as macaques progress to AIDS following inoculation with a molecular clone of SIV. We propose to complete a rigorous examination of the SIV env gene variants, including analysis of tissue-specific variants, so that we can identify particular viruses whose presence correlates with development of AIDS. Chimeric viruses will be constructed that incorporate the env gene of variants representing the viruses most prevalent when disease develops. The functional, immunogenic and pathogenic properties of these viruses will be compared to the original molecular clone of SIV from which they arose. In studies of SIV env variation, a consistent pattern of change in the env gene was identified during the course of infection. We will determine if the pattern of change characteristic of SIV env variants that predominate in macaques with AIDS is also characteristic of HIV variants associated with the later stages of human AIDS. The studies proposed in this application, which include analysis of the molecular and biological properties of the variant that are selected for in the host, will provide insight into the mechanisms underlying progression to AIDS.

Agency
National Institute of Health (NIH)
Institute
National Institute of Allergy and Infectious Diseases (NIAID)
Type
Research Project (R01)
Project #
5R01AI034251-03
Application #
2069352
Study Section
AIDS and Related Research Study Section 3 (ARRC)
Project Start
1993-05-01
Project End
1998-04-30
Budget Start
1995-05-01
Budget End
1996-04-30
Support Year
3
Fiscal Year
1995
Total Cost
Indirect Cost
Name
University of Washington
Department
Microbiology/Immun/Virology
Type
Schools of Medicine
DUNS #
135646524
City
Seattle
State
WA
Country
United States
Zip Code
98195
Voronin, Yegor; Holte, Sarah; Overbaugh, Julie et al. (2009) Genetic drift of HIV populations in culture. PLoS Genet 5:e1000431
Graham, Susan M; Holte, Sarah; Kimata, Jason T et al. (2009) A decrease in albumin in early SIV infection is related to viral pathogenicity. AIDS Res Hum Retroviruses 25:433-40
Eastman, Dawnnica; Piantadosi, Anne; Wu, Xueling et al. (2008) Heavily glycosylated, highly fit SIVMne variants continue to diversify and undergo selection after transmission to a new host and they elicit early antibody dependent cellular responses but delayed neutralizing antibody responses. Virol J 5:90
Pineda, Mario Javier; Orton, Brannon R; Overbaugh, Julie (2007) A TRIM5alpha-independent post-entry restriction to HIV-1 infection of macaque cells that is dependent on the path of entry. Virology 363:310-8
Voronin, Yegor; Chohan, Bhavna; Emerman, Michael et al. (2007) Primary isolates of human immunodeficiency virus type 1 are usually dominated by the major variants found in blood. J Virol 81:10232-41
Voronin, Yegor; Overbaugh, Julie; Emerman, Michael (2005) Simian immunodeficiency virus variants that differ in pathogenicity differ in fitness under rapid cell turnover conditions. J Virol 79:15091-8
Dooher, Julia E; Pineda, Mario Javier; Overbaugh, Julie et al. (2004) Characterization of virus infectivity and cell-free capsid assembly of SIVMneCL8. J Med Primatol 33:262-71
Williams, Dawnnica; Overbaugh, Julie (2004) A real-time PCR-based method to independently sample single simian immunodeficiency virus genomes from macaques with a range of viral loads. J Med Primatol 33:227-35
Zhang, Ming; Gaschen, Brian; Blay, Wendy et al. (2004) Tracking global patterns of N-linked glycosylation site variation in highly variable viral glycoproteins: HIV, SIV, and HCV envelopes and influenza hemagglutinin. Glycobiology 14:1229-46
Forte, Serene; Harmon, Mary-Elizabeth; Pineda, Mario J et al. (2003) Early- and intermediate-stage variants of simian immunodeficiency virus replicate efficiently in cells lacking CCR5. J Virol 77:9723-7

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