This proposal describes genetic and biochemical analyses of the replication of the Moloney murine leukemia virus, the prototype of the simple mammalian retroviruses. We are broadly interested in all aspects of the viral life cycle, but are especially focused on identifying and characterizing the cellular host factors that interact with the virus. In this proposal we will address three host systems that act to limit or restrict virus replication. First, we will characterize the mechanisms by which embryonic stem (ES) cells transcriptionally silence proviral DNAs and maintain the integrity of the germ line. We will study two parallel pathways - a rapid and efficient mechanism targeting a specific DNA element of the Moloney provirus, and a slower, less efficient one acting more broadly on many proviruses -- and determine how these silencing mechanisms are specifically active in ES cells. These experiments will provide important new information about the properties that define """"""""stemness"""""""" - the pluripotent state of ES cells. Second, we will explore the role of SUMOylation, the covalent addition of SUMO (small ubiquitin-related modifier) to particular protein substrates, in virus replication and restriction. We will test for SUMOylation of the viral capsid protein during infection, and explore the potential role of SUMOylation in the capsid-dependent restriction of virus infection by the host genes Fv1 and TRIM5?. Third, we will examine the mechanism of expression of the Gag-Pol precursor protein, which requires the suppression of translational termination at a UAG stop codon at the 3'end of the gag gene. This readthrough event depends on an RNA pseudoknot immediately downstream of the stop codon. We will identify new regulators of readthrough by isolation of RNA-protein complexes from infected cells. Finally, we will explore the mechanisms by which the MuLV mRNA for Gag and Gag-Pol evades the Nonsense-Mediated mRNA Decay (NMD) system. We will test the hypothesis that an interaction between the retroviral reverse transcriptase and the host translational termination factor eRF1 prevents normal recognition of the viral mRNA by NMD and protects them from degradation. All three areas of investigation will advance our understanding of host defense systems and may provide important new targets for antiviral intervention. Most importantly, these experiments will significantly extend our understanding of fundamental aspects of retrovirus replication, and of new cell biological processes that impact on these important viruses.

Public Health Relevance

The goal of this project is to expand our knowledge of the Moloney murine leukemia virus, prototype of the simple mammalian retroviruses, and model for the human retroviruses HTLV-1 and HIV-1. The proposed work is focused on virus-host interactions: the characterization of cellular machinery exploited by the virus, and especially host restriction systems that act to inhibit virus replication. The studies will reveal new aspects of cell biology -- transcription, protein processing, and translation -- and will inform new approaches to treatment of viral leukemias and AIDS.

National Institute of Health (NIH)
National Cancer Institute (NCI)
Research Project (R01)
Project #
Application #
Study Section
Virology - A Study Section (VIRA)
Program Officer
Read-Connole, Elizabeth Lee
Project Start
Project End
Budget Start
Budget End
Support Year
Fiscal Year
Total Cost
Indirect Cost
Columbia University (N.Y.)
Schools of Medicine
New York
United States
Zip Code
Cingöz, Oya; Goff, Stephen P (2018) Cyclin-dependent kinase activity is required for type I interferon production. Proc Natl Acad Sci U S A 115:E2950-E2959
Zhu, Yiping; Wang, Gary Z; Cingöz, Oya et al. (2018) NP220 mediates silencing of unintegrated retroviral DNA. Nature 564:278-282
Zhu, Yiping; Luo, Shukun; Sabo, Yosef et al. (2017) Heme Oxygenase 2 Binds Myristate to Regulate Retrovirus Assembly and TLR4 Signaling. Cell Host Microbe 21:220-230
Goff, Stephen P (2017) Evolution: Zapping viral RNAs. Nature 550:46-47
Geis, Franziska K; Galla, Melanie; Hoffmann, Dirk et al. (2017) Potent and reversible lentiviral vector restriction in murine induced pluripotent stem cells. Retrovirology 14:34
Wang, Cheng; Goff, Stephen P (2017) Differential control of retrovirus silencing in embryonic cells by proteasomal regulation of the ZFP809 retroviral repressor. Proc Natl Acad Sci U S A 114:E922-E930
Wang, Gary Z; Goff, Stephen P (2017) Transcriptional Silencing of Moloney Murine Leukemia Virus in Human Embryonic Carcinoma Cells. J Virol 91:
Tang, Xuhua; Zhu, Yiping; Baker, Stacey L et al. (2016) Structural basis of suppression of host translation termination by Moloney Murine Leukemia Virus. Nat Commun 7:12070
Wang, Gary Z; Wang, Ying; Goff, Stephen P (2016) Histones Are Rapidly Loaded onto Unintegrated Retroviral DNAs Soon after Nuclear Entry. Cell Host Microbe 20:798-809
Yang, Bin Xia; El Farran, Chadi A; Guo, Hong Chao et al. (2015) Systematic identification of factors for provirus silencing in embryonic stem cells. Cell 163:230-45

Showing the most recent 10 out of 87 publications