Studies on the total synthesis of the glycopeptide antibiotics vancomycin, teicoplanin, chloropeptins, RP-66453, ramoplanin, and their key partial structures, analogs, and analog libraries are detailed. Their comparative examination may shed further light on the subtle aspects of their site and mechanism of action, identify the role and importance of their structural features, probe engineered structural changes introduced to address the emerging clinical resistance (binding to L-Lys-D-Ala-D-Lac vs L-Lys-D- Ala-D-Ala), and should identify simpler structures with improved properties. Similarly, details of proposed total syntheses of thiocoraline and BE-22179, C2- symmetric cyclic octadepsipeptides possessing two pendant heterocyclic chromophores which are related to sandramycin, the luzopeptins, and quinoxapeptins and which derive their properties through sequence selective DNA bisintercalation, are presented. The definition of the DNA binding properties and biological properties of thiocoraline and BE-22179, key partial structures, and analogs will be conducted as will be a continuation of analogous studies on the luzopeptins and quinoxapeptins. Additionally, plans for the preparation of libraries of analogs of HUN-7293 are detailed to probe and optimize its structural features responsible for inhibition of cell adhesion molecule expression (VCAM-1) and the resultant anti-inflammatory activity and activity in autoimmune diseases.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Research Project (R01)
Project #
5R01CA041101-20
Application #
6738141
Study Section
Bio-Organic and Natural Products Chemistry Study Section (BNP)
Program Officer
Lees, Robert G
Project Start
1985-07-01
Project End
2005-04-30
Budget Start
2004-05-01
Budget End
2005-04-30
Support Year
20
Fiscal Year
2004
Total Cost
$375,030
Indirect Cost
Name
Scripps Research Institute
Department
Type
DUNS #
781613492
City
La Jolla
State
CA
Country
United States
Zip Code
92037
Wu, Zhi-Chen; Isley, Nicholas A; Boger, Dale L (2018) N-Terminus Alkylation of Vancomycin: Ligand Binding Affinity, Antimicrobial Activity, and Site-Specific Nature of Quaternary Trimethylammonium Salt Modification. ACS Infect Dis 4:1468-1474
Okano, Akinori; Isley, Nicholas A; Boger, Dale L (2017) Peripheral modifications of [?[CH2NH]Tpg4]vancomycin with added synergistic mechanisms of action provide durable and potent antibiotics. Proc Natl Acad Sci U S A 114:E5052-E5061
Okano, Akinori; Isley, Nicholas A; Boger, Dale L (2017) Total Syntheses of Vancomycin-Related Glycopeptide Antibiotics and Key Analogues. Chem Rev 117:11952-11993
Boger, Dale L (2017) The Difference a Single Atom Can Make: Synthesis and Design at the Chemistry-Biology Interface. J Org Chem 82:11961-11980
Okano, Akinori; Nakayama, Atsushi; Wu, Kejia et al. (2015) Total syntheses and initial evaluation of [?[C(?S)NH]Tpg?]vancomycin, [?[C(?NH)NH]Tpg?]vancomycin, [?[CH?NH]Tpg?]vancomycin, and their (4-chlorobiphenyl)methyl derivatives: synergistic binding pocket and peripheral modifications for the glycopeptide antib J Am Chem Soc 137:3693-704
Lee, Kiyoun; Poudel, Yam B; Glinkerman, Christopher M et al. (2015) Total synthesis of dihydrolysergic acid and dihydrolysergol: development of a divergent synthetic strategy applicable to rapid assembly of D-ring analogs. Tetrahedron 71:5897-5905
Hou, L; Jiang, J; Liu, B et al. (2014) Association between smoking and deaths due to colorectal malignant carcinoma: a national population-based case-control study in China. Br J Cancer 110:1351-8
Okano, Akinori; Nakayama, Atsushi; Schammel, Alex W et al. (2014) Total synthesis of [?[C(?NH)NH]Tpg(4)]vancomycin and its (4-chlorobiphenyl)methyl derivative: impact of peripheral modifications on vancomycin analogues redesigned for dual D-Ala-D-Ala and D-Ala-D-Lac binding. J Am Chem Soc 136:13522-5
Nakayama, Atsushi; Okano, Akinori; Feng, Yiqing et al. (2014) Enzymatic glycosylation of vancomycin aglycon: completion of a total synthesis of vancomycin and N- and C-terminus substituent effects of the aglycon substrate. Org Lett 16:3572-5
Pinchman, Joseph R; Boger, Dale L (2013) Probing the role of the vancomycin e-ring aryl chloride: selective divergent synthesis and evaluation of alternatively substituted E-ring analogues. J Med Chem 56:4116-24

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