Ras oncogenes encode small, membrane-associated, GTP binding proteins that function as signal transducers in pathways that control cell growth, morphology, cell-cell contact, stress response, neoplasia and metastasis. It has been estimated that mutations involving the Ras oncogene contribute to 60-75% of all human neoplasms. Ras proteins are highly conserved in evolution. Homologs have been found all eucaryotes examined to date from yeast to mammals. Molecular studies have focused on three key aspects of Ras regulation: 1) GTP hydrolysis and GDP/GTP exchange, 2) protein-protein interactions through effector binding domains, and 3) post-translational lipid modification (prenylation) and the effect of these modifications on subcellular localization and signaling. Work on Ras prenylation) and the effect of these modifications on subcellular localization and signaling. Work on Ras prenylation has lead to the first rationally designed anti-cancer drug that targets the Ras oncogene. Despite this significant advance, many important questions remain. The long range goal of this project is to use the yeast system to study post-translational regulation of Ras activity with an emphasis on the role of lipid modification in Ras subcellular targeting.
The specific aims are to: 1) Determine how palmitoylation of Ras occurs and how it is regulated, 2) Determine how two newly discovered proteins, Erf2 and Erf4/Shr5, affect the subcellular localization of Ras, and 3) Define the intracellular pathway by which prenylated proteins such as Ras localize to the plasma membrane. This work will aid in the identification of new anti-Ras drug targets as well as improving our understanding of the mechanism of action of drugs currently under development. This work therefore addresses basic cancer research objectives.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Research Project (R01)
Project #
5R01CA050211-12
Application #
6512649
Study Section
Physiological Chemistry Study Section (PC)
Program Officer
Gallahan, Daniel L
Project Start
2000-03-01
Project End
2005-02-28
Budget Start
2002-03-01
Budget End
2003-02-28
Support Year
12
Fiscal Year
2002
Total Cost
$209,475
Indirect Cost
Name
University of Iowa
Department
Biochemistry
Type
Schools of Medicine
DUNS #
041294109
City
Iowa City
State
IA
Country
United States
Zip Code
52242
Hamel, Laura D; Deschenes, Robert J; Mitchell, David A (2014) A fluorescence-based assay to monitor autopalmitoylation of zDHHC proteins applicable to high-throughput screening. Anal Biochem 460:1-8
Mitchell, David A; Hamel, Laura D; Reddy, Krishna D et al. (2014) Mutations in the X-linked intellectual disability gene, zDHHC9, alter autopalmitoylation activity by distinct mechanisms. J Biol Chem 289:18582-92
Mitchell, David A; Hamel, Laura D; Ishizuka, Kayoko et al. (2012) The Erf4 subunit of the yeast Ras palmitoyl acyltransferase is required for stability of the Acyl-Erf2 intermediate and palmitoyl transfer to a Ras2 substrate. J Biol Chem 287:34337-48
Mitchell, David A; Mitchell, Gayatri; Ling, Yiping et al. (2010) Mutational analysis of Saccharomyces cerevisiae Erf2 reveals a two-step reaction mechanism for protein palmitoylation by DHHC enzymes. J Biol Chem 285:38104-14
Vinnakota, Kalyan C; Mitchell, David A; Deschenes, Robert J et al. (2010) Analysis of the diffusion of Ras2 in Saccharomyces cerevisiae using fluorescence recovery after photobleaching. Phys Biol 7:026011
Jennings, Benjamin C; Nadolski, Marissa J; Ling, Yiping et al. (2009) 2-Bromopalmitate and 2-(2-hydroxy-5-nitro-benzylidene)-benzo[b]thiophen-3-one inhibit DHHC-mediated palmitoylation in vitro. J Lipid Res 50:233-42
Linder, Maurine E; Deschenes, Robert J (2007) Palmitoylation: policing protein stability and traffic. Nat Rev Mol Cell Biol 8:74-84
Mitchell, David A; Vasudevan, Anant; Linder, Maurine E et al. (2006) Protein palmitoylation by a family of DHHC protein S-acyltransferases. J Lipid Res 47:1118-27
Budde, Cheryl; Schoenfish, Marissa J; Linder, Maurine E et al. (2006) Purification and characterization of recombinant protein acyltransferases. Methods 40:143-50
Wang, Geng; Deschenes, Robert J (2006) Plasma membrane localization of Ras requires class C Vps proteins and functional mitochondria in Saccharomyces cerevisiae. Mol Cell Biol 26:3243-55

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