Our overall goal is to understand how eukaryotic cells protect against the toxic and mutagenic effects of DNA damaging agents, in particular alkylating agents. Such mutagens and carcinogens are everpresent in our environment as both synthetic and naturally occurring compounds. In addition, numerous alkylating agents are commonly used in the cancer clinic for chemotherapy. Given that one in three people will be diagnosed with cancer at some point during their lifetime (at least in the Western world) large numbers of people will be exposed to very toxic levels of these agents. A clear understanding of how normal cells and tumor cells respond to alkylating agents is therefore important. We have studied the cellular responses to alkylating agents in E. coli, S. cerevisiae, S. pombe, rodent and human cells. Indeed, using cloned alkylation repair genes we have genetically manipulated these organisms to understand the relative importance of responses to different types of alkylated DNA bases. During the last funding period we generated two new strains of mice that are null for the Aag 3MeA DNA glycosylase and the Mgmt DNA repair methyltransferase alkylation repair genes. We also characterized a novel mechanism by which mutator phenotypes can be generated, and we analyzed the global transcriptional response of S. cerevisiae to an alkylating agent using DNA chip technology. In addition we demonstrated that the 3MeA and O6MeG DNA lesions each elicit a signal for the induction of p53 and the induction apoptosis. Taking these tools and extensive """"""""preliminary data"""""""" our specific aims include the following:- further characterize the global transcriptional response of S. cerevisiae to alkylating and other agents; define the molecular signaling events that occur between sensing alkylated DNA bases and executing cell cycle check points and apoptosis; explore structure-function relationships for 3MeA DNA glycosylases, in particular the glycosylases that cause mutator phenotypes. The health relatedness of this project lies in the fact that it will contribute to our understanding of some of the vents that lead to carcinogenesis.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Research Project (R01)
Project #
5R01CA055042-11
Application #
6362567
Study Section
Chemical Pathology Study Section (CPA)
Project Start
1991-07-02
Project End
2001-05-31
Budget Start
2001-03-01
Budget End
2001-05-31
Support Year
11
Fiscal Year
2001
Total Cost
$29,635
Indirect Cost
Name
Harvard University
Department
Genetics
Type
Schools of Public Health
DUNS #
City
Boston
State
MA
Country
United States
Zip Code
02115
Jordan, Jennifer J; Chhim, Sophea; Margulies, Carrie M et al. (2017) ALKBH7 drives a tissue and sex-specific necrotic cell death response following alkylation-induced damage. Cell Death Dis 8:e2947
Chaim, Isaac A; Nagel, Zachary D; Jordan, Jennifer J et al. (2017) In vivo measurements of interindividual differences in DNA glycosylases and APE1 activities. Proc Natl Acad Sci U S A 114:E10379-E10388
Calvo, Jennifer A; Allocca, Mariacarmela; Fake, Kimberly R et al. (2016) Parp1 protects against Aag-dependent alkylation-induced nephrotoxicity in a sex-dependent manner. Oncotarget 7:44950-44965
Fu, Dragony; Samson, Leona D; Hübscher, Ullrich et al. (2015) The interaction between ALKBH2 DNA repair enzyme and PCNA is direct, mediated by the hydrophobic pocket of PCNA and perturbed in naturally-occurring ALKBH2 variants. DNA Repair (Amst) 35:13-8
Meira, Lisiane B; Calvo, Jennifer A; Shah, Dharini et al. (2014) Repair of endogenous DNA base lesions modulate lifespan in mice. DNA Repair (Amst) 21:78-86
Ebrahimkhani, Mohammad R; Daneshmand, Ali; Mazumder, Aprotim et al. (2014) Aag-initiated base excision repair promotes ischemia reperfusion injury in liver, brain, and kidney. Proc Natl Acad Sci U S A 111:E4878-86
Calvo, Jennifer A; Moroski-Erkul, Catherine A; Lake, Annabelle et al. (2013) Aag DNA glycosylase promotes alkylation-induced tissue damage mediated by Parp1. PLoS Genet 9:e1003413
Mazumder, Aprotim; Pesudo, Laia Quiros; McRee, Siobhan et al. (2013) Genome-wide single-cell-level screen for protein abundance and localization changes in response to DNA damage in S. cerevisiae. Nucleic Acids Res 41:9310-24
Mazumder, Aprotim; Tummler, Katja; Bathe, Mark et al. (2013) Single-cell analysis of ribonucleotide reductase transcriptional and translational response to DNA damage. Mol Cell Biol 33:635-42
Svensson, J Peter; Quirós Pesudo, Laia; McRee, Siobhan K et al. (2013) Genomic phenotyping by barcode sequencing broadly distinguishes between alkylating agents, oxidizing agents, and non-genotoxic agents, and reveals a role for aromatic amino acids in cellular recovery after quinone exposure. PLoS One 8:e73736

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