This proposal is a competitive renewal (CA74305) that concerns the application of chemical approaches to the investigation of the mechanisms and effects of phosphorylation of cell signaling proteins. The importance of protein phosphorylation is becoming increasing well recognized in cell growth, differentiation and human diseases. However, a detailed knowledge is lacking of how protein kinases are regulated, how they recognize their substrates, and what the function of their phosphorylation events are. We plan to develop and apply three different chemical technologies to help to address these problems. First, we are using expressed protein ligation to investigate the biochemical, structural, and functional consequences of tail tyrosine phosphorylation of several important signaling enzymes (SHP-1, SHP-2, Src, Csk). In particular, how tall tyrosine phosphorylation of proteins affects the structure and function of these enzymes will be investigated. Second, we are developing a chemical rescue approach to complement mutant, catalytically defective protein tyrosine kinases with the long term goal of revealing novel aspects of their functions in cell signaling. The loss of a catalytically important arginine and its complementation by small diamino compounds will be studied using protein tyrosine kinase Csk as a paradigm system. Third, we are synthesizing, rationally designed, bisubstrate analog protein kinase inhibitors as structural and biological tools for several protein tyrosine and serine/threonine kinases. Structural features of these compounds that are critical for potency and specificity will be probed by synthetic modifications. The development and application of these chemical methods should ultimately provide a greater understanding of the roles of protein phosphorylation in cellular function in healthy and disease states. The new approaches to protein kinase inhibitors may ultimately provide lead agents for the treatment of cancer, immune system-related diseases, and cardiovascular pathologies.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Research Project (R01)
Project #
5R01CA074305-09
Application #
6724763
Study Section
Bio-Organic and Natural Products Chemistry Study Section (BNP)
Program Officer
Lees, Robert G
Project Start
1997-04-01
Project End
2007-03-31
Budget Start
2004-04-01
Budget End
2005-03-31
Support Year
9
Fiscal Year
2004
Total Cost
$291,030
Indirect Cost
Name
Johns Hopkins University
Department
Pharmacology
Type
Schools of Medicine
DUNS #
001910777
City
Baltimore
State
MD
Country
United States
Zip Code
21218
Wang, Zhihong; Kim, Min-Sik; Martinez-Ferrando, Isabel et al. (2018) Analysis of Cellular Tyrosine Phosphorylation via Chemical Rescue of Conditionally Active Abl Kinase. Biochemistry 57:1390-1398
Kalin, Jay H; Wu, Muzhou; Gomez, Andrea V et al. (2018) Targeting the CoREST complex with dual histone deacetylase and demethylase inhibitors. Nat Commun 9:53
Chu, Nam; Salguero, Antonieta L; Liu, Albert Z et al. (2018) Akt Kinase Activation Mechanisms Revealed Using Protein Semisynthesis. Cell 174:897-907.e14
Dempsey, Daniel R; Cole, Philip A (2018) Protein Chemical Approaches to Understanding PTEN Lipid Phosphatase Regulation. Methods Enzymol 607:405-422
Dempsey, Daniel R; Jiang, Hanjie; Kalin, Jay H et al. (2018) Site-Specific Protein Labeling with N-Hydroxysuccinimide-Esters and the Analysis of Ubiquitin Ligase Mechanisms. J Am Chem Soc 140:9374-9378
Weiser, Brian P; Rodriguez, Gaddiel; Cole, Philip A et al. (2018) N-terminal domain of human uracil DNA glycosylase (hUNG2) promotes targeting to uracil sites adjacent to ssDNA-dsDNA junctions. Nucleic Acids Res 46:7169-7178
Rodriguez, Gaddiel; Esadze, Alexandre; Weiser, Brian P et al. (2017) Disordered N-Terminal Domain of Human Uracil DNA Glycosylase (hUNG2) Enhances DNA Translocation. ACS Chem Biol 12:2260-2263
Boija, Ann; Mahat, Dig Bijay; Zare, Aman et al. (2017) CBP Regulates Recruitment and Release of Promoter-Proximal RNA Polymerase II. Mol Cell 68:491-503.e5
Weiser, Brian P; Stivers, James T; Cole, Philip A (2017) Investigation of N-Terminal Phospho-Regulation of Uracil DNA Glycosylase Using Protein Semisynthesis. Biophys J 113:393-401
Esadze, Alexandre; Rodriguez, Gaddiel; Weiser, Brian P et al. (2017) Measurement of nanoscale DNA translocation by uracil DNA glycosylase in human cells. Nucleic Acids Res 45:12413-12424

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