Dr. Vertino's overall research initiative is focused on understanding the molecular mechanisms underlying establishment of altered DNA methylation patterns and its contribution to human carcinogenesis. The aberran methylation of normally unmethylated CpG island-containing gene promoters is one such alteration that has recently been implicated in the inactivation tumo suppresser and other genes in human cancer. In human breast cancer, CpG island methylation is involved in the inactivation of several genes known to be important mediators of tumor cell growth and clinical outcome, including the estrogen receptor gene, the E-cadherin gene, and the p16/INK4A gene. Furthermore, increased expression of DNA (cytosine-5)-methyltransferase (DNA MTase), the enzyme responsible for DNA methylation in mammalian cells, is associated with the more aggressive estrogen receptor negative tumor phenotype Although there have been numerous studies correlating aberrant CpG island methylation with gene inactivity, few studies have addressed how previously unmethylated CpG island sequences become methylated de novo in adult somatic cells and whether this event plays a direct role in gene silencing. We have recently demonstrated that cells engineered to overexpress DNA MTase can be used to model the progression of CpG island methylation as it might occur during the early stages of tumorigenesis. To address the molecular mechanisms underlying aberrant promoter region methylation and the role of this event in human breast carcinogenesis, we propose to develop an in vitro model of de nov methylation in human breast epithelial cells. Specifically, we will determine whether increased expression of DNA MTase can drive the methylation of genes known to be silenced in association with CpG island methylation in human breas tumors. Secondly, we will determine whether locus-specific signals serve to direct the de novo methylation of CpG island promoters in breast epithelial cells. Lastly, we will determine whether de novo methylation of CpG island sequences is sufficient to initiate the gene silencing process by determining the downstream effects of DNA MTase-driven CpG island methylation on gene expression. A further understanding of the genesis and consequences of aberran de novo methylation during carcinogenesis will provide the basis for the futur development of novel demethylation strategies in the treatment of human breast cancer and other neoplastic diseases.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Research Project (R01)
Project #
5R01CA077337-04
Application #
6362646
Study Section
Chemical Pathology Study Section (CPA)
Project Start
1998-05-01
Project End
2003-02-28
Budget Start
2001-03-01
Budget End
2002-02-28
Support Year
4
Fiscal Year
2001
Total Cost
$207,906
Indirect Cost
Name
Emory University
Department
Radiation-Diagnostic/Oncology
Type
Schools of Medicine
DUNS #
042250712
City
Atlanta
State
GA
Country
United States
Zip Code
30322
Bell, Joshua S K; Vertino, Paula M (2017) Orphan CpG islands define a novel class of highly active enhancers. Epigenetics 12:449-464
Bell, Joshua S K; Kagey, Jacob D; Barwick, Benjamin G et al. (2016) Factors affecting the persistence of drug-induced reprogramming of the cancer methylome. Epigenetics 11:273-87
Horton, John R; Engstrom, Amanda; Zoeller, Elizabeth L et al. (2016) Characterization of a Linked Jumonji Domain of the KDM5/JARID1 Family of Histone H3 Lysine 4 Demethylases. J Biol Chem 291:2631-46
Scott, Emma C; Gardner, Eugene J; Masood, Ashiq et al. (2016) A hot L1 retrotransposon evades somatic repression and initiates human colorectal cancer. Genome Res 26:745-55
Horton, John R; Liu, Xu; Gale, Molly et al. (2016) Structural Basis for KDM5A Histone Lysine Demethylase Inhibition by Diverse Compounds. Cell Chem Biol 23:769-781
Kellner, Wendy A; Bell, Joshua S K; Vertino, Paula M (2015) GC skew defines distinct RNA polymerase pause sites in CpG island promoters. Genome Res 25:1600-9
Hashimoto, Hideharu; Zhang, Xing; Vertino, Paula M et al. (2015) The Mechanisms of Generation, Recognition, and Erasure of DNA 5-Methylcytosine and Thymine Oxidations. J Biol Chem 290:20723-33
Stoyanov, Evgeniy; Ludwig, Guy; Mizrahi, Lina et al. (2015) Chronic liver inflammation modifies DNA methylation at the precancerous stage of murine hepatocarcinogenesis. Oncotarget 6:11047-60
Brodie, Seth A; Li, Ge; El-Kommos, Adam et al. (2014) Class I HDACs are mediators of smoke carcinogen-induced stabilization of DNMT1 and serve as promising targets for chemoprevention of lung cancer. Cancer Prev Res (Phila) 7:351-61
Lin, Yanni; Cradick, Thomas J; Brown, Matthew T et al. (2014) CRISPR/Cas9 systems have off-target activity with insertions or deletions between target DNA and guide RNA sequences. Nucleic Acids Res 42:7473-85

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