Detailed mechanistic aspects of carbohydrate metabolism are being studied. Emphasis is being placed on several enzymes which are involved in key steps in the synthesis and in the degradation of carbohydrate-energy storage and energy utilization. These enzymes are important in metabolic function in the liver, muscle and brain and improper regulation leads to complications in diabetes and apparently in Infant Death Syndrome. The primary enzymes under scrutiny are phosphoenolpyruvate carboxykinase, enolase and pyruvate kinase. The multiple roles which the activating cations play in the chemical mechanism and in the regulation of catalytic activity are being elucidated by kinetic and physical studies. The application of water proton and substrate (1H, 13C, 19F, 31P) nuclear relaxation rate techniques are utilized to determine the location of the cations, their functions and their effects on ligand bindings. The locations of the metal ions with respect to each other will be measured by EPR and PRR methods. The environments of these cations will be determined. From nuclear relaxation rate studies the structures of the substrates and the regulators at the cation site and their exchange rates will be determined. Novel applications of protein and of metal magnetic resonance studied will be attempted to describe the nature of ligand-protein interactions, activation of substrates and activation of the enzyme. Synergistic effects of ligand binding will be described and quantitated. These ligand effects will be utilized to design activators or inhibitors of key enzymes in carbohydrate metabolism. Such an approach to enzyme activation/inhibition could prove fruitful for other enzyme systems. Comparative enzymology will be studied to search for enzyme homology. Such an approach to enzymology may yield additional insight into mechanistic details of this group of enzymes.

Agency
National Institute of Health (NIH)
Institute
National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK)
Type
Research Project (R01)
Project #
5R01DK017049-16
Application #
3225692
Study Section
Biophysics and Biophysical Chemistry A Study Section (BBCA)
Project Start
1976-09-01
Project End
1989-08-31
Budget Start
1988-09-01
Budget End
1989-08-31
Support Year
16
Fiscal Year
1988
Total Cost
Indirect Cost
Name
University of Notre Dame
Department
Type
Schools of Arts and Sciences
DUNS #
824910376
City
Notre Dame
State
IN
Country
United States
Zip Code
46556
Holyoak, Todd; Nowak, Thomas (2004) pH Dependence of the reaction catalyzed by avian mitochondrial phosphoenolpyruvate carboxykinase. Biochemistry 43:7054-65
Susan-Resiga, Delia; Nowak, Thomas (2004) Proton donor in yeast pyruvate kinase: chemical and kinetic properties of the active site Thr 298 to Cys mutant. Biochemistry 43:15230-45
Susan-Resiga, Delia; Nowak, Thomas (2003) The proton transfer step catalyzed by yeast pyruvate kinase. J Biol Chem 278:12660-71
Susan-Resiga, Delia; Nowak, Thomas (2003) Monitoring active site alterations upon mutation of yeast pyruvate kinase using 205Tl+ NMR. J Biol Chem 278:40943-52
Krautwurst, Hans; Roschzttardtz, Hannetz; Bazaes, Sergio et al. (2002) Lysine 213 and histidine 233 participate in Mn(II) binding and catalysis in Saccharomyces cerevisiae phosphoenolpyruvate carboxykinase. Biochemistry 41:12763-70
Rios, Sandra E; Nowak, Thomas (2002) Role of cysteine 306 in the catalytic mechanism of Ascaris suum phosphoenolpyruvate carboxykinase. Arch Biochem Biophys 404:25-37
Holyoak, T; Nowak, T (2001) Structural investigation of the binding of nucleotide to phosphoenolpyruvate carboxykinase by NMR. Biochemistry 40:11037-47
Bollenbach, T J; Nowak, T (2001) Thermodynamic linked-function analysis of Mg(2+)-activated yeast pyruvate kinase. Biochemistry 40:13088-96
Bollenbach, T J; Nowak, T (2001) Kinetic linked-function analysis of the multiligand interactions on Mg(2+)-activated yeast pyruvate kinase. Biochemistry 40:13097-106
Hlavaty, J J; Nowak, T (2000) Characterization of the second metal site on avian phosphoenolpyruvate carboxykinase. Biochemistry 39:1373-88

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