Nitrogen is an element that is essential for all life processes and it is found abundantly in the Earth's atmosphere in the form of N2 gas. However, N2 is not metabolized by most organisms and consequently, cellular nitrogen is usually obtained as ammonia, nitrate, or as part of an organic molecule. These combined sources of nitrogen are relatively scarce and represent the most limiting nutrient in Man's effort to feed the World population. Because organic nitrogen is incompletely recycled in the global ecosystem and available ammonia and nitrate are continually metabolized to N2 through nitrification and denitrification, the biological reduction of N2 occupies a pivotal position in the nitrogen cycle. This process, called nitrogen fixation, is performed only by certain prokaryotic microorganisms and is catalyzed by the enzyme nitrogenase. The agronomic significance of symbiotic microorganisms that fix N2 and deliver it to their plant hosts is well established and there are real prospects that the economy of nitrogen fixation can be improved through the genetic manipulation of N2-fixing species. Such improvements are dependent upon a fundamental understanding of the biochemical action and genetic regulation of the nitrogen fixation should prove invaluable in duplicating the activity of nitrogenase in chemical systems, which might lead to viable complementary commercial processes. The proposed research is centered on the iron-molybdenum cofactor, the putative N2-binding site of nitrogenase, to determine how nitrogenase is organized to effect biological nitrogen fixation. Experiments include: modification, purification, and/or crystallization to determine its chemical composition, size and structure; electrochemical, chemical and spectroscopic studies to elucidate its redox properties and potential for catalysis; characterization of potentially altered cofactors from mutant strains; how and where the cofactor is bound to the polypeptides; and how this interaction modifies its structure and functioning. The resulting information should aid both in the understanding of the catalytic mechanism and also in generating targets for beneficial modifications of the enzyme, such that a significant health and nutritional benefit might accrue in the future.

Agency
National Institute of Health (NIH)
Institute
National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK)
Type
Research Project (R01)
Project #
5R01DK037255-08
Application #
3236081
Study Section
Metallobiochemistry Study Section (BMT)
Project Start
1985-08-01
Project End
1995-07-31
Budget Start
1993-08-01
Budget End
1994-07-31
Support Year
8
Fiscal Year
1993
Total Cost
Indirect Cost
Name
Virginia Polytechnic Institute and State University
Department
Type
Schools of Earth Sciences/Natur
DUNS #
003137015
City
Blacksburg
State
VA
Country
United States
Zip Code
24061
Fisher, Karl; Lowe, David J; Tavares, Pedro et al. (2007) Conformations generated during turnover of the Azotobacter vinelandii nitrogenase MoFe protein and their relationship to physiological function. J Inorg Biochem 101:1649-56
Xiao, Yuming; Fisher, Karl; Smith, Matt C et al. (2006) How nitrogenase shakes--initial information about P-cluster and FeMo-cofactor normal modes from nuclear resonance vibrational spectroscopy (NRVS). J Am Chem Soc 128:7608-12
Durrant, Marcus C; Francis, Amanda; Lowe, David J et al. (2006) Evidence for a dynamic role for homocitrate during nitrogen fixation: the effect of substitution at the alpha-Lys426 position in MoFe-protein of Azotobacter vinelandii. Biochem J 397:261-70
Fisher, Karl; Dilworth, Michael J; Newton, William E (2006) Azotobacter vinelandii vanadium nitrogenase: formaldehyde is a product of catalyzed HCN reduction, and excess ammonia arises directly from catalyzed azide reduction. Biochemistry 45:4190-8
Maskos, Zofia; Fisher, Karl; Sorlie, Morten et al. (2005) Variant MoFe proteins of Azotobacter vinelandii: effects of carbon monoxide on electron paramagnetic resonance spectra generated during enzyme turnover. J Biol Inorg Chem 10:394-406
Fisher, Karl; Newton, William E (2005) Nitrogenase proteins from Gluconacetobacter diazotrophicus, a sugarcane-colonizing bacterium. Biochim Biophys Acta 1750:154-65
Han, Jaehong; Newton, William E (2004) Differentiation of acetylene-reduction sites by stereoselective proton addition during Azotobacter vinelandii nitrogenase-catalyzed C2D2 reduction. Biochemistry 43:2947-56
Fisher, K; Newton, W E; Lowe, D J (2001) Electron paramagnetic resonance analysis of different Azotobacter vinelandii nitrogenase MoFe-protein conformations generated during enzyme turnover: evidence for S = 3/2 spin states from reduced MoFe-protein intermediates. Biochemistry 40:3333-9
Fisher, K; Dilworth, M J; Kim, C H et al. (2000) Azotobacter vinelandii nitrogenases containing altered MoFe proteins with substitutions in the FeMo-cofactor environment: effects on the catalyzed reduction of acetylene and ethylene. Biochemistry 39:2970-9
Fisher, K; Dilworth, M J; Kim, C H et al. (2000) Azotobacter vinelandii nitrogenases with substitutions in the FeMo-cofactor environment of the MoFe protein: effects of acetylene or ethylene on interactions with H+, HCN, and CN-. Biochemistry 39:10855-65

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