Estrogen receptors (ERs) and their ligands (estrogens) are important regulators of cell type-specific patterns of gene expression that control a diverse array of physiological processes in many tissues. Cellular signaling by estrogens occurs through at least two distinct molecular pathways involving different enhancer DNA elements: (1) direct binding of liganded ERs to estrogen response elements (EREs) (the """"""""ER/ERE pathway"""""""") and (2) indirect association of liganded ERs with AP-1-responsive elements via heterodimers of Fos and Jun (the """"""""ER/AP-1 pathway""""""""). Both pathways require a host of coregulatory proteins (e.g. coactivators and corepressors), although the distinct coactivator requirements for each pathway have not been defined. The long-term objective of these studies is to achieve a better understanding of the molecular mechanisms of ligand-regulated transcription by ERs and their associated coregulators in the chromatin environment of the nucleus. Although great strides have been made in understanding some of the molecular details of estrogen signaling, our understanding of the ER/AP-1 pathway, the role of chromatin remodeling complexes, and the mechanisms of cell type- and ligand-specific responses is limited. Our broad hypothesis is that transcriptional outcomes in estrogen signaling pathways are ultimately determined by a number of receptor and non-receptor factors, including the ER isoform (ERa vs. ERb), cell type-specific repertoire of coregulators, type of enhancer elements, nature of the ligand, and cross-talk with other signaling pathways. In this proposal, we outline a series of experiments using biochemical, cell-based, and genomic approaches that will test this hypothesis. Specifically, we will: (1) determine the molecular mechanisms underlying cell type-specific transcriptional activation in the ER/AP-1 pathway by estrogens and selective ER modulator (SERM) drugs, (2) examine the role of chromatin remodeling and the requirement for specific chromatin remodeling complexes in ER-dependent transcription, and (3) analyze coactivator recruitment and chromatin remodeling at ER-regulated promoters on a genome-wide basis. Collectively, our studies will provide new insights into the molecular mechanisms of estrogen signaling and the cell type specific molecular pharmacology of SERMs, which have implications for understanding and treating hormone-regulated cancers.

Agency
National Institute of Health (NIH)
Institute
National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK)
Type
Research Project (R01)
Project #
5R01DK058110-07
Application #
7106401
Study Section
Molecular and Cellular Endocrinology Study Section (MCE)
Program Officer
Margolis, Ronald N
Project Start
2000-09-15
Project End
2010-07-31
Budget Start
2006-08-01
Budget End
2007-07-31
Support Year
7
Fiscal Year
2006
Total Cost
$294,504
Indirect Cost
Name
Cornell University
Department
Biochemistry
Type
Schools of Earth Sciences/Natur
DUNS #
872612445
City
Ithaca
State
NY
Country
United States
Zip Code
14850
Ryu, Keun Woo; Nandu, Tulip; Kim, Jiyeon et al. (2018) Metabolic regulation of transcription through compartmentalized NAD+ biosynthesis. Science 360:
Franco, Hector L; Nagari, Anusha; Malladi, Venkat S et al. (2018) Enhancer transcription reveals subtype-specific gene expression programs controlling breast cancer pathogenesis. Genome Res 28:159-170
Danko, Charles G; Choate, Lauren A; Marks, Brooke A et al. (2018) Dynamic evolution of regulatory element ensembles in primate CD4+ T cells. Nat Ecol Evol 2:537-548
Willcockson, Alexandra R; Nandu, Tulip; Liu, Cheuk-Lun et al. (2018) Transcriptome signature identifies distinct cervical pathways induced in lipopolysaccharide-mediated preterm birth. Biol Reprod 98:408-421
Murakami, Shino; Nagari, Anusha; Kraus, W Lee (2017) Dynamic assembly and activation of estrogen receptor ? enhancers through coregulator switching. Genes Dev 31:1535-1548
Nagari, Anusha; Murakami, Shino; Malladi, Venkat S et al. (2017) Computational Approaches for Mining GRO-Seq Data to Identify and Characterize Active Enhancers. Methods Mol Biol 1468:121-38
Luo, Xin; Ryu, Keun Woo; Kim, Dae-Seok et al. (2017) PARP-1 Controls the Adipogenic Transcriptional Program by PARylating C/EBP? and Modulating Its Transcriptional Activity. Mol Cell 65:260-271
Doiguchi, Masamichi; Nakagawa, Takeya; Imamura, Yuko et al. (2016) SMARCAD1 is an ATP-dependent stimulator of nucleosomal H2A acetylation via CBP, resulting in transcriptional regulation. Sci Rep 6:20179
Kraus, W Lee (2016) Editorial: Centennial Celebration - A Focus on Endocrine Disrupting Chemicals… One Hundred Years in the Making. Mol Endocrinol 30:827-8
Sun, Miao; Kraus, W Lee (2015) From discovery to function: the expanding roles of long noncoding RNAs in physiology and disease. Endocr Rev 36:25-64

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