The incidence of skin cancer, the most common type of human cancer, is increasing in the United States and worldwide. The damage of DNA bases by ultraviolet (UV) radiation causes mutations and UV light is strongly implicated in the development of human basal and squamous cell carcinoma as well as the more lethal melanoma. To understand UV carcinogenesis, a more detailed knowledge of the molecular mechanisms of UV damage formation, DNA repair processes, and mutation induction is necessary. We will apply several sensitive techniques to map UV-induced lesions [primarily cyclobutane pyrimidine dimers (CPDs) and (6-4) photoproducts (6-4)PPs)] and their repair rates at the DNA sequence level. We will continue to investigate the molecular mechanisms of selective UV damage formation in vivo, and to analyze DNA sequence-specific repair rates in several human genes. As part of these aims, we will attempt to develop new methodology to study repair of (6-4) photoproducts at the DNA sequence level. We will measure the major types of DNA lesions and their sequence distribution in solar light irradiated cells. The specific mechanisms of UV mutagenesis will be determined by using a supF shuttle vector and a lacl transgene to study mutagenesis after irradiation with different UV light sources (UVC, UVB, solar light). These studies will address questions as to how the methylation of CpG sequences changes the mutational spectra, which photoproduct contributes most to mutagenesis, what the contribution of CPD deamination to UV mutagenicity is, and whether the frequency of UV-specific mutations correlates with photoproduct frequencies. The sequence context dependence of lesion bypass will be studied with site-specific CPDs and (6-4) photoproducts in a HeLa cell-free extract system. The interference of UV damage with transcription will be analyzed by determining the effects of (6-4) photoproducts on transcription factor binding and by studying the effects of UV lesions (both CPDs and 6-4PPs) in promoters on transcription.

Agency
National Institute of Health (NIH)
Institute
National Institute of Environmental Health Sciences (NIEHS)
Type
Research Project (R01)
Project #
5R01ES006070-11
Application #
6524724
Study Section
Radiation Study Section (RAD)
Program Officer
Reinlib, Leslie J
Project Start
1992-08-01
Project End
2004-07-31
Budget Start
2002-08-01
Budget End
2003-07-31
Support Year
11
Fiscal Year
2002
Total Cost
$267,724
Indirect Cost
Name
City of Hope/Beckman Research Institute
Department
Type
DUNS #
City
Duarte
State
CA
Country
United States
Zip Code
91010
Pfeifer, Gerd P (2015) How the environment shapes cancer genomes. Curr Opin Oncol 27:71-7
Jin, Seung-Gi; Xiong, Wenying; Wu, Xiwei et al. (2015) The DNA methylation landscape of human melanoma. Genomics 106:322-30
Pfeifer, Gerd P; Xiong, Wenying; Hahn, Maria A et al. (2014) The role of 5-hydroxymethylcytosine in human cancer. Cell Tissue Res 356:631-41
Kim, Sang-in; Jin, Seung-Gi; Pfeifer, Gerd P (2013) Formation of cyclobutane pyrimidine dimers at dipyrimidines containing 5-hydroxymethylcytosine. Photochem Photobiol Sci 12:1409-15
Besaratinia, Ahmad; Pfeifer, Gerd P (2012) Measuring the formation and repair of UV damage at the DNA sequence level by ligation-mediated PCR. Methods Mol Biol 920:189-202
Pfeifer, Gerd P; Besaratinia, Ahmad (2012) UV wavelength-dependent DNA damage and human non-melanoma and melanoma skin cancer. Photochem Photobiol Sci 11:90-7
Lahtz, Christoph; Pfeifer, Gerd P (2011) Epigenetic changes of DNA repair genes in cancer. J Mol Cell Biol 3:51-8
Besaratinia, Ahmad; Yoon, Jae-In; Schroeder, Christi et al. (2011) Wavelength dependence of ultraviolet radiation-induced DNA damage as determined by laser irradiation suggests that cyclobutane pyrimidine dimers are the principal DNA lesions produced by terrestrial sunlight. FASEB J 25:3079-91
Hendriks, Giel; Calleja, Fabienne; Besaratinia, Ahmad et al. (2010) Transcription-dependent cytosine deamination is a novel mechanism in ultraviolet light-induced mutagenesis. Curr Biol 20:170-5
Besaratinia, Ahmad; Pfeifer, Gerd P (2009) DNA-lesion mapping in mammalian cells. Methods 48:35-9

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