The goal of this research project is to identify novel genes that are involved in human retinal disorders, a stated priority of the National Eye Institute. To accomplish this, additional genes causing Leber congenital amaurosis (LCA), the most common hereditary cause of visual impairment in infants and children, will be identified using a positional cloning approach. Discovery of novel LCA genes will assist the development of new diagnostic tools and treatments. In addition, since mutations in LCA disease genes also cause other retinal dystrophies, isolation of additional LCA disease genes will provide important insights concerning the molecular mechanisms underlying both LCA and retinal diseases in general. LCA is a set of inherited, early onset retinopathies that affect about 1 in 15,000 in the general population and account for more than 5% of all retinal dystrophies. Currently, mutations in at least ten genes have been associated with recessive LCA. Studies of these genes have lead to the development of novel pharmaceutical intervention and gene therapy. However, about 40% of familial cases cannot be explained by mutations in these known LCA genes, representing one of the most significant gaps in our understanding of LCA. To clone additional LCA disease genes, we have collected DNA samples from 38 consanguineous families with LCA. Our initial mutation analysis has suggested that 28 of these families are likely due to mutations in novel LCA disease genes. In this proposal, we plan to use positional cloning to identify the underlying mutations carried by these 28 families using a combinatorial approach of molecular biology and bioinformatics.
Our Specific Aims are to: 1. Perform Positional Cloning of the LCA3 Gene. 2. Identify Novel LCA Loci and Genes. 3. Continued Enrollment and Mutation Analysis of LCA Families Progress toward these goals is likely to identify new LCA genes whose subsequent study will lead to new insights of disease mechanisms as well as lay the foundation for developing new diagnoses and treatment methods.

Agency
National Institute of Health (NIH)
Institute
National Eye Institute (NEI)
Type
Research Project (R01)
Project #
5R01EY018571-03
Application #
7736790
Study Section
Special Emphasis Panel (ZRG1-CB-G (90))
Program Officer
Chin, Hemin R
Project Start
2007-12-01
Project End
2011-11-30
Budget Start
2009-12-01
Budget End
2010-11-30
Support Year
3
Fiscal Year
2010
Total Cost
$415,917
Indirect Cost
Name
Baylor College of Medicine
Department
Genetics
Type
Schools of Medicine
DUNS #
051113330
City
Houston
State
TX
Country
United States
Zip Code
77030
Wang, Jun; Zhao, Li; Wang, Xia et al. (2018) GRIPT: a novel case-control analysis method for Mendelian disease gene discovery. Genome Biol 19:203
Eblimit, Aiden; Zaneveld, Smriti Agrawal; Liu, Wei et al. (2018) NMNAT1 E257K variant, associated with Leber Congenital Amaurosis (LCA9), causes a mild retinal degeneration phenotype. Exp Eye Res 173:32-43
Li, Huajin; Jones, Evan M; Li, Hui et al. (2018) Clinical and genetic features of eight Chinese autosomal-dominant optic atrophy pedigrees with six novel OPA1 pathogenic variants. Ophthalmic Genet 39:569-576
DuPont, Mariana; Jones, Evan M; Xu, Mingchu et al. (2018) Investigating the disease association of USH2A p.C759F variant by leveraging large retinitis pigmentosa cohort data. Ophthalmic Genet 39:291-292
Gui, Shupeng; Rice, Andrew P; Chen, Rui et al. (2017) A scalable algorithm for structure identification of complex gene regulatory network from temporal expression data. BMC Bioinformatics 18:74
Chen, Yong; Zhao, Li; Wang, Yi et al. (2017) SeqCNV: a novel method for identification of copy number variations in targeted next-generation sequencing data. BMC Bioinformatics 18:147
Xu, Mingchu; Xie, Yajing Angela; Abouzeid, Hana et al. (2017) Mutations in the Spliceosome Component CWC27 Cause Retinal Degeneration with or without Additional Developmental Anomalies. Am J Hum Genet 100:592-604
Yuan, Zhisheng; Li, Baiyu; Xu, Mingchu et al. (2017) The phenotypic variability of HK1-associated retinal dystrophy. Sci Rep 7:7051
Soens, Zachry T; Branch, Justin; Wu, Shijing et al. (2017) Leveraging splice-affecting variant predictors and a minigene validation system to identify Mendelian disease-causing variants among exon-captured variants of uncertain significance. Hum Mutat 38:1521-1533
Jones, Kaylie D; Wheaton, Dianna K; Bowne, Sara J et al. (2017) Next-generation sequencing to solve complex inherited retinal dystrophy: A case series of multiple genes contributing to disease in extended families. Mol Vis 23:470-481

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