With the aim of understanding the mechanisms of evolution of genes and populations and of maintenance of genetic variability within populations, two mutually related research projects with emphasis on molecular aspects are proposed. (1) Differentiation of genes and populations. Mathematical theories of the relationship between the phylogeny of genes and the phylogeny of species and of the evolution of reproductive isolation in speciation will be developed. Statistical methods of constructing phylogenetic trees or dendrograms from molecular data will also be studied, and an attempt will be made to find the most efficient method of obtaining the correct phylogenetic tree. To understand the mechanism of concerted evolution of multigene families, phylogenetic analyses of DNA sequences will be conducted for various multigene families such as the T-cell receptor, MHC, and immunoglobulin families. An effort will also be made to collect gene frequency data for as many genetic loci as possible for about 50 representative human races (populations), and the pattern and mechanism of evolution of human populations will be investigated. (2) Genetic variability and its maintenance. Mathematical theories for evaluating the effects of overdominant and purifying selection on the extent of genetic variability among member genes of a multigene family and the coalescence time of polymorphic alleles within populations will be developed. Mathematical studies will also be made to develop a method of estimating the recombination value between two linked blocks of restriction enzyme cleavage sites in DNA and the expected relationship between the number of heterozygous loci and growth rate. The mathematical theories obtained will then be applied to analyze data from various organisms. In addition to the above studies, statistical analysis of polymorphic DNA sequences will be made to investigate the mechanism of maintenance of DNA polymorphism.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
2R01GM020293-15
Application #
3269976
Study Section
Genetics Study Section (GEN)
Project Start
1979-02-01
Project End
1992-01-31
Budget Start
1987-02-01
Budget End
1988-01-31
Support Year
15
Fiscal Year
1987
Total Cost
Indirect Cost
Name
University of Texas Health Science Center Houston
Department
Type
Overall Medical
DUNS #
City
Houston
State
TX
Country
United States
Zip Code
77225
Nozawa, Masafumi; Miura, Sayaka; Nei, Masatoshi (2012) Origins and evolution of microRNA genes in plant species. Genome Biol Evol 4:230-9
Nei, Masatoshi; Nozawa, Masafumi (2011) Roles of mutation and selection in speciation: from Hugo de Vries to the modern genomic era. Genome Biol Evol 3:812-29
Miura, Sayaka; Nozawa, Masafumi; Nei, Masatoshi (2011) Evolutionary changes of the target sites of two microRNAs encoded in the Hox gene cluster of Drosophila and other insect species. Genome Biol Evol 3:129-39
Nei, Masatoshi; Suzuki, Yoshiyuki; Nozawa, Masafumi (2010) The neutral theory of molecular evolution in the genomic era. Annu Rev Genomics Hum Genet 11:265-89
Das, Sabyasachi; Mohamedy, Uzra; Hirano, Masayuki et al. (2010) Analysis of the immunoglobulin light chain genes in zebra finch: evolutionary implications. Mol Biol Evol 27:113-20
Takezaki, Naoko; Nei, Masatoshi; Tamura, Koichiro (2010) POPTREE2: Software for constructing population trees from allele frequency data and computing other population statistics with Windows interface. Mol Biol Evol 27:747-52
Nozawa, Masafumi; Miura, Sayaka; Nei, Masatoshi (2010) Origins and evolution of microRNA genes in Drosophila species. Genome Biol Evol 2:180-9
Nozawa, Masafumi; Suzuki, Yoshiyuki; Nei, Masatoshi (2009) Reliabilities of identifying positive selection by the branch-site and the site-prediction methods. Proc Natl Acad Sci U S A 106:6700-5
Das, Sabyasachi; Nikolaidis, Nikolas; Nei, Masatoshi (2009) Genomic organization and evolution of immunoglobulin kappa gene enhancers and kappa deleting element in mammals. Mol Immunol 46:3171-7
Xu, Guixia; Ma, Hong; Nei, Masatoshi et al. (2009) Evolution of F-box genes in plants: different modes of sequence divergence and their relationships with functional diversification. Proc Natl Acad Sci U S A 106:835-40

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