Nozawa, Masafumi; Miura, Sayaka; Nei, Masatoshi (2012) Origins and evolution of microRNA genes in plant species. Genome Biol Evol 4:230-9
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Nei, Masatoshi; Nozawa, Masafumi (2011) Roles of mutation and selection in speciation: from Hugo de Vries to the modern genomic era. Genome Biol Evol 3:812-29
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Miura, Sayaka; Nozawa, Masafumi; Nei, Masatoshi (2011) Evolutionary changes of the target sites of two microRNAs encoded in the Hox gene cluster of Drosophila and other insect species. Genome Biol Evol 3:129-39
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Nozawa, Masafumi; Miura, Sayaka; Nei, Masatoshi (2010) Origins and evolution of microRNA genes in Drosophila species. Genome Biol Evol 2:180-9
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Nei, Masatoshi; Suzuki, Yoshiyuki; Nozawa, Masafumi (2010) The neutral theory of molecular evolution in the genomic era. Annu Rev Genomics Hum Genet 11:265-89
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Das, Sabyasachi; Mohamedy, Uzra; Hirano, Masayuki et al. (2010) Analysis of the immunoglobulin light chain genes in zebra finch: evolutionary implications. Mol Biol Evol 27:113-20
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Takezaki, Naoko; Nei, Masatoshi; Tamura, Koichiro (2010) POPTREE2: Software for constructing population trees from allele frequency data and computing other population statistics with Windows interface. Mol Biol Evol 27:747-52
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Nozawa, Masafumi; Suzuki, Yoshiyuki; Nei, Masatoshi (2009) Reliabilities of identifying positive selection by the branch-site and the site-prediction methods. Proc Natl Acad Sci U S A 106:6700-5
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Das, Sabyasachi; Nikolaidis, Nikolas; Nei, Masatoshi (2009) Genomic organization and evolution of immunoglobulin kappa gene enhancers and kappa deleting element in mammals. Mol Immunol 46:3171-7
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Xu, Guixia; Ma, Hong; Nei, Masatoshi et al. (2009) Evolution of F-box genes in plants: different modes of sequence divergence and their relationships with functional diversification. Proc Natl Acad Sci U S A 106:835-40
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