The determination of the stereochemistry and electronic structure of substrates and active site residues in reaction intermediates of enzymes stabilized by cryosolvent methods is proposed. Reaction intermediates stabilized at subzero temperatures in organic-aqueous cosolvent mixtures will be prepared for spectroscopic studies by EPR and ENDOR methods. The radial separation between paramagnetic sites and protons and other nuclides in the vicinity of the paramagnetic sites will be determined on the basis of the EPR and ENDOR absorptions of substrates and catalytically essential active site residues. These results will then be employed to assign the exact catalytically productive configurations of substrates bound in the active site of enzymes through application of computer controlled molecular graphics techniques. The methods are designed to determine local structure of enzymic active sites and of substrates in kinetically competent reaction intermediates to assess the structural and electronic basis of enzyme function on a detailed molecular level.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM021900-12
Application #
3270790
Study Section
Biophysics and Biophysical Chemistry B Study Section (BBCB)
Project Start
1978-09-01
Project End
1990-03-31
Budget Start
1987-04-01
Budget End
1988-03-31
Support Year
12
Fiscal Year
1987
Total Cost
Indirect Cost
Name
University of Chicago
Department
Type
Schools of Medicine
DUNS #
225410919
City
Chicago
State
IL
Country
United States
Zip Code
60637
Mustafi, D; Sosa-Peinado, A; Makinen, M W (2001) ENDOR structural characterization of a catalytically competent acylenzyme reaction intermediate of wild-type TEM-1 beta-lactamase confirms glutamate-166 as the base catalyst. Biochemistry 40:2397-409
Atanasov, B P; Mustafi, D; Makinen, M W (2000) Protonation of the beta-lactam nitrogen is the trigger event in the catalytic action of class A beta-lactamases. Proc Natl Acad Sci U S A 97:3160-5
Sosa-Peinado, A; Mustafi, D; Makinen, M W (2000) Overexpression and biosynthetic deuterium enrichment of TEM-1 beta-lactamase for structural characterization by magnetic resonance methods. Protein Expr Purif 19:235-45
Horvath, M P; Copeland, R A; Makinen, M W (1999) The second derivative electronic absorption spectrum of cytochrome c oxidase in the Soret region. Biophys J 77:1694-711
Makinen, M W (1998) Electron nuclear double resonance determined structures of enzyme reaction intermediates: structural evidence for substrate destabilization. Spectrochim Acta A Mol Biomol Spectrosc 54A:2269-81
Makinen, M W; Mustafi, D (1995) The vanadyl ion: molecular structure of coordinating ligands by electron paramagnetic resonance and electron nuclear double resonance spectroscopy. Met Ions Biol Syst 31:89-127
Mustafi, D; Makinen, M W (1994) Catalytic conformation of carboxypeptidase A. Structure of a true enzyme reaction intermediate determined by electron nuclear double resonance. J Biol Chem 269:4587-95
Wells, G B; Mustafi, D; Makinen, M W (1994) Structure at the active site of an acylenzyme of alpha-chymotrypsin and implications for the catalytic mechanism. An electron nuclear double resonance study. J Biol Chem 269:4577-86
Mustafi, D; Nakagawa, Y (1994) Characterization of calcium-binding sites in the kidney stone inhibitor glycoprotein nephrocalcin with vanadyl ions: electron paramagnetic resonance and electron nuclear double resonance spectroscopy. Proc Natl Acad Sci U S A 91:11323-7
Makinen, M W; Troyer, J M; van der Werff, H et al. (1989) Dynamical structure of carboxypeptidase A. J Mol Biol 207:201-16

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