We will investigate the regulation of recA-dependent processes in E. coli, which include genetic recombination, radiation and chemical mutagenesis, inhibition of cell division, and the induction of temperate bacteriophage. A cellular signal elaborated when DNA is damaged or its synthesis is interrupted activates recA protein to attack repressors by proteolytic cleavage, leading to induction of these processes. We will attempt to identify this signal by studying the reaction in which recA protein attacks repressors and by examining conditions in induced cells that might affect this reaction. We also will study the mechanism of regulation of late gene expression during growth of bacteriophage lambda and its relative phi 82. We have partially purified the protein encoded by lambda gene Q, which positively regulates phage late genes, and we have shown that it is active to promote synthesis of a late gene product in vitro, in the crude coupled transcription-translation system. We will examine its mechanism of action by determining its effect on transcription in the crude extract, and we will derive from the extract a minimal system in which it is active. In particular, we will determine if it acts by anti-termination, as we suspect, or if it uses a different mechanism.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM021941-11
Application #
3270808
Study Section
(MG)
Project Start
1978-02-01
Project End
1986-01-31
Budget Start
1985-02-01
Budget End
1986-01-31
Support Year
11
Fiscal Year
1985
Total Cost
Indirect Cost
Name
Cornell University
Department
Type
Schools of Arts and Sciences
DUNS #
City
Ithaca
State
NY
Country
United States
Zip Code
14850
Bird, Jeremy G; Strobel, Eric J; Roberts, Jeffrey W (2016) A universal transcription pause sequence is an element of initiation factor ?70-dependent pausing. Nucleic Acids Res 44:6732-40
Strobel, Eric J; Roberts, Jeffrey W (2015) Two transcription pause elements underlie a ?70-dependent pause cycle. Proc Natl Acad Sci U S A 112:E4374-80
Strobel, Eric J; Roberts, Jeffrey W (2014) Regulation of promoter-proximal transcription elongation: enhanced DNA scrunching drives ?Q antiterminator-dependent escape from a ?70-dependent pause. Nucleic Acids Res 42:5097-108
Liu, Xiaoqiu; Jiang, Huifeng; Gu, Zhenglong et al. (2013) High-resolution view of bacteriophage lambda gene expression by ribosome profiling. Proc Natl Acad Sci U S A 110:11928-33
Perdue, Sarah A; Roberts, Jeffrey W (2010) A backtrack-inducing sequence is an essential component of Escherichia coli ?(70)-dependent promoter-proximal pausing. Mol Microbiol 78:636-50
Hatoum, Asma; Roberts, Jeffrey (2008) Prevalence of RNA polymerase stalling at Escherichia coli promoters after open complex formation. Mol Microbiol 68:17-28
Roberts, Jeffrey W; Shankar, Smita; Filter, Joshua J (2008) RNA polymerase elongation factors. Annu Rev Microbiol 62:211-33
Davydova, Elena K; Santangelo, Thomas J; Rothman-Denes, Lucia B (2007) Bacteriophage N4 virion RNA polymerase interaction with its promoter DNA hairpin. Proc Natl Acad Sci U S A 104:7033-8
Park, Joo-Seop; Roberts, Jeffrey W (2006) Role of DNA bubble rewinding in enzymatic transcription termination. Proc Natl Acad Sci U S A 103:4870-5
Holmes, Shannon F; Santangelo, Thomas J; Cunningham, Candice K et al. (2006) Kinetic investigation of Escherichia coli RNA polymerase mutants that influence nucleotide discrimination and transcription fidelity. J Biol Chem 281:18677-83

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