The long-term objectives of this proposal are to understand the regulation of ribosomal protein synthesis in yeast. We have chosen to study this problem in yeast because of the simplicity of the organism and the availability of genetic, physiological, and molecular approaches. We will analyze regulation in vivo by measuring beta-galactosidase (lacZ) activity from ribosomal protein beta-galactosidase fusions introduced into yeast. These polypeptide fusions should reflect the normal regulation of ribosomal protein genes. Once the regulation of the fusions has been understood, the ribosomal protein genes will be mutated in vitro to define the DNA sequences responsible for this regulation. Cell mutants will also be isolated to define proteins which act in trans to regulate ribosomal protein synthesis. A similar analysis will be applied to splicing. DNA mutants will be generated in vitro to analyze the requirements for splicing. Wild type and mutant intron-containing fusions will be utilized to generate mutants in splicing enzymes. These latter studies are pointed towards defining the requirements for splicing in yeast and the role of splicing in ribosomal protein regulation. A similar goal exists for the generation of an intronless rp 51 gene; Can it replace the normal rp 51 gene? While all of these studies will be done in yeast, we expect that many of the results will be applicable to ribosomal protein regulation in metazoans. Since the neoplastic state is characterized by unregulated growth and since ribosomal proteins are growth regulated, their relationship to the health sciences is strong.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM023549-12
Application #
3271727
Study Section
Molecular Biology Study Section (MBY)
Project Start
1977-02-01
Project End
1989-01-31
Budget Start
1988-02-01
Budget End
1989-01-31
Support Year
12
Fiscal Year
1988
Total Cost
Indirect Cost
Name
Brandeis University
Department
Type
Organized Research Units
DUNS #
616845814
City
Waltham
State
MA
Country
United States
Zip Code
02454
Vodala, Sadanand; Pescatore, Stefan; Rodriguez, Joseph et al. (2012) The oscillating miRNA 959-964 cluster impacts Drosophila feeding time and other circadian outputs. Cell Metab 16:601-12
Khodor, Yevgenia L; Menet, Jerome S; Tolan, Michael et al. (2012) Cotranscriptional splicing efficiency differs dramatically between Drosophila and mouse. RNA 18:2174-86
Rodriguez, Joseph; Menet, Jerome S; Rosbash, Michael (2012) Nascent-seq indicates widespread cotranscriptional RNA editing in Drosophila. Mol Cell 47:27-37
Khodor, Yevgenia L; Rodriguez, Joseph; Abruzzi, Katharine C et al. (2011) Nascent-seq indicates widespread cotranscriptional pre-mRNA splicing in Drosophila. Genes Dev 25:2502-12
Kadener, Sebastian; Menet, Jerome S; Sugino, Ken et al. (2009) A role for microRNAs in the Drosophila circadian clock. Genes Dev 23:2179-91
Hage, Rosemary; Tung, Luh; Du, Hansen et al. (2009) A targeted bypass screen identifies Ynl187p, Prp42p, Snu71p, and Cbp80p for stable U1 snRNP/Pre-mRNA interaction. Mol Cell Biol 29:3941-52
Kadener, Sebastian; Rodriguez, Joseph; Abruzzi, Katharine Compton et al. (2009) Genome-wide identification of targets of the drosha-pasha/DGCR8 complex. RNA 15:537-45
Macias, Sara; Bragulat, Mireia; Tardiff, Daniel F et al. (2008) L30 binds the nascent RPL30 transcript to repress U2 snRNP recruitment. Mol Cell 30:732-42
Vodala, Sadanand; Abruzzi, Katharine Compton; Rosbash, Michael (2008) The nuclear exosome and adenylation regulate posttranscriptional tethering of yeast GAL genes to the nuclear periphery. Mol Cell 31:104-13
Chekanova, Julia A; Abruzzi, Katharine C; Rosbash, Michael et al. (2008) Sus1, Sac3, and Thp1 mediate post-transcriptional tethering of active genes to the nuclear rim as well as to non-nascent mRNP. RNA 14:66-77

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