The long-term goal is to understand molecular basis for signal transduction at the structural level. Major focuses on three membrane proteins that form channels or pores across membranes, secondary focus is on a structural understanding of intracellular signalling by phosphorylation. With acetylcholine receptors, a ligand-gated ion conducting channel, the goal is a three-dimensional structure at a resolution sufficient for determining polypeptide folding and arrangement. Three-dimensional cubic crystals (space group P432, a = 257 A) for x-ray diffraction and electron microscopy, and two dimensional crystals for electron crystallography are to answer questions fundamental to understanding neurochemical mechanisms. Topography of chains is to be mapped by chemical labeling peptides already largely assigned by mass spectrometry, even of unpurified mixtures of cleavage fragments, plus or minus 0.2 Daltons up to 3,000 Daltons. Crystals of colicin Ia (C2221, a = 67, b = 178, c = 297 A) are to give a structure for a bacterial voltage gated channel-forming protein at 3.5 A resolution. Carbene labeling from photoactivable reagents and chemical labeling of accessible regions of either side are to delineate configuration within the membrane. Single channel conductance and mutagenesis are to uncover basic mechanisms controlling conductivity of this 70 kD ion channel. A 28 kD bacillus toxin is to give rise to a model for multimeric pore-forming complexes in membranes. This insecticidal hydrophobic protein crystallizes (P6122, a = 65, c = 165 A) and high resolution analysis will be completed using three solved derivatives, to 2.5 A resolution. A critical branch point switching enzyme in prokaryotes, isocitrate dehydrogenase, is for structure analysis in its P41212, a = 105.1, c = 150.3 to 2.5 A) active and phosphorylated inactive forms both crystallized. lt typifies ultrasensitive switching in biology. Structural analyses of high resolution site-directed mutant trypsin crystals permit the first true enzyme substrate complex, insights into structure and protein dynamics, and are to be used to understand mechanisms by which substrates can activate enzymes.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM024485-15
Application #
3272331
Study Section
Biophysical Chemistry Study Section (BBCB)
Project Start
1979-04-01
Project End
1994-03-31
Budget Start
1991-04-01
Budget End
1992-03-31
Support Year
15
Fiscal Year
1991
Total Cost
Indirect Cost
Name
University of California San Francisco
Department
Type
Schools of Medicine
DUNS #
073133571
City
San Francisco
State
CA
Country
United States
Zip Code
94143
Kintzer, Alexander F; Green, Evan M; Dominik, Pawel K et al. (2018) Structural basis for activation of voltage sensor domains in an ion channel TPC1. Proc Natl Acad Sci U S A 115:E9095-E9104
Finer-Moore, Janet S; Lee, Tom T; Stroud, Robert M (2018) A Single Mutation Traps a Half-Sites Reactive Enzyme in Midstream, Explaining Asymmetry in Hydride Transfer. Biochemistry 57:2786-2795
Kumar, Hemant; Finer-Moore, Janet S; Jiang, Xiaoxu et al. (2018) Crystal Structure of a ligand-bound LacY-Nanobody Complex. Proc Natl Acad Sci U S A 115:8769-8774
Kintzer, Alexander F; Stroud, Robert M (2018) On the structure and mechanism of two-pore channels. FEBS J 285:233-243
Boswell-Casteel, Rebba C; Johnson, Jennifer M; Stroud, Robert M et al. (2016) Integral Membrane Protein Expression in Saccharomyces cerevisiae. Methods Mol Biol 1432:163-86
Kintzer, Alexander F; Stroud, Robert M (2016) Structure, inhibition and regulation of two-pore channel TPC1 from Arabidopsis thaliana. Nature 531:258-62
Johri, Atul K; Oelmüller, Ralf; Dua, Meenakshi et al. (2015) Fungal association and utilization of phosphate by plants: success, limitations, and future prospects. Front Microbiol 6:984
Kim, JungMin; Wu, Shenping; Tomasiak, Thomas M et al. (2015) Subnanometre-resolution electron cryomicroscopy structure of a heterodimeric ABC exporter. Nature 517:396-400
Salo-Ahen, Outi M H; Tochowicz, Anna; Pozzi, Cecilia et al. (2015) Hotspots in an obligate homodimeric anticancer target. Structural and functional effects of interfacial mutations in human thymidylate synthase. J Med Chem 58:3572-81
Monk, Brian C; Tomasiak, Thomas M; Keniya, Mikhail V et al. (2014) Architecture of a single membrane spanning cytochrome P450 suggests constraints that orient the catalytic domain relative to a bilayer. Proc Natl Acad Sci U S A 111:3865-70

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