The proposal seeks to uncover fundamental mechanisms of transmembrane processes at the level of atomic structure. Specific objectives are to understand the mechanisms of transmembrane signaling in the acetylcholine receptor superfamily of pentameric, ion channel neuroreceptors by structural analysis of components, fragments of the AcCh Receptor alpha chain in complex with neurotoxins to which they bind tightly, the extracellular portion of a subunit, and portions of a whole receptor. These are to provide a three dimensional road map of interactions and will have broad impact on the understanding of fundamental elements in neurochemistry, and structure assisted development of selective psychoactive drugs. The structure of a bacterial, monomeric ion channel-forming protein colicin Ia (Col Ia), with similar conductance properties to neuronal receptors, is being extended in resolution from 3.0 Angstrom units to 2.3 Angstrom units. Mutations will be used to define the impact of charge and polar arrangements in regulating conductance I and selectivity of ion channels. Interpretation of the unique structural features, and their role in determining receptor binding, translocation and channel insertion will be defined by a combination of mutational, channel, forming, bacterial targeting, thermodynamic, and structural analysis. Electron microscopic analysis is to assist in defining the membrane bound channel state. The mechanism of host immunity to this bacteriocidal protein involves high affinity intra-membrane association with a three membrane-crossing immunity protein Imm Ia. The structure of this complex will be sought to uncover basic mechanisms of intramembrane interaction, with impact on the design of modulators of transmembrane receptors. The structure of a channel forming Bacillus thuringiensis toxin (CytA) at 2.3 Angstrom units is a paradigm for interpreting the many existing mutations that alter transmembrane assembly, and channel forming properties, to understand the mechanisms of channel formation, and the membrane bound form. The initial 1.6 Angstrom units structure of apo-Cholesterol esterase, an abundant, enzyme important in regulating transmembrane transport of triglycerides and cholesterol from cholesterol esters is to understand membrane active mechanisms, and to provide a template for structure assisted drug development.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
2R01GM024485-22A1
Application #
2745431
Study Section
Molecular and Cellular Biophysics Study Section (BBCA)
Project Start
1979-04-01
Project End
2002-12-31
Budget Start
1999-01-01
Budget End
1999-12-31
Support Year
22
Fiscal Year
1999
Total Cost
Indirect Cost
Name
University of California San Francisco
Department
Biochemistry
Type
Schools of Medicine
DUNS #
073133571
City
San Francisco
State
CA
Country
United States
Zip Code
94143
Kintzer, Alexander F; Green, Evan M; Dominik, Pawel K et al. (2018) Structural basis for activation of voltage sensor domains in an ion channel TPC1. Proc Natl Acad Sci U S A 115:E9095-E9104
Finer-Moore, Janet S; Lee, Tom T; Stroud, Robert M (2018) A Single Mutation Traps a Half-Sites Reactive Enzyme in Midstream, Explaining Asymmetry in Hydride Transfer. Biochemistry 57:2786-2795
Kumar, Hemant; Finer-Moore, Janet S; Jiang, Xiaoxu et al. (2018) Crystal Structure of a ligand-bound LacY-Nanobody Complex. Proc Natl Acad Sci U S A 115:8769-8774
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Boswell-Casteel, Rebba C; Johnson, Jennifer M; Stroud, Robert M et al. (2016) Integral Membrane Protein Expression in Saccharomyces cerevisiae. Methods Mol Biol 1432:163-86
Kintzer, Alexander F; Stroud, Robert M (2016) Structure, inhibition and regulation of two-pore channel TPC1 from Arabidopsis thaliana. Nature 531:258-62
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Kim, JungMin; Wu, Shenping; Tomasiak, Thomas M et al. (2015) Subnanometre-resolution electron cryomicroscopy structure of a heterodimeric ABC exporter. Nature 517:396-400
Salo-Ahen, Outi M H; Tochowicz, Anna; Pozzi, Cecilia et al. (2015) Hotspots in an obligate homodimeric anticancer target. Structural and functional effects of interfacial mutations in human thymidylate synthase. J Med Chem 58:3572-81
Monk, Brian C; Tomasiak, Thomas M; Keniya, Mikhail V et al. (2014) Architecture of a single membrane spanning cytochrome P450 suggests constraints that orient the catalytic domain relative to a bilayer. Proc Natl Acad Sci U S A 111:3865-70

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