We propose to study the structure and regulation of th alcohol dehydrogenase (ADH) genes in the baker's yeast, Saccharomyces cerevisiae, by genetic and biochemical techniques. The wild-type gene for both major isozymes has been isolated, as well as the genes from several mutants. More mutant genes coding for the glucose-repressed ADHII isozyme will be cloned by recombinant DNA techniques. Most of the mutant genes have cis-acting regulatory mutations that are due to insertion of the yeast transposable element, ty. The exact site of the insertion in te 7 mutants will be determined by DNA sequence analysis. The site of mutation in two putative point mutants will be determined in the same manner. Transcriptional regulation of the two homologous isozyme genes will be studied by constructing mutant ADH genes containing insertions of phage T4 DNA. These insertions will allow unique mRNA species from the two related genes to be distinguished and quantitated by hybridization. Both major isozyme genes will be modified by in vitro mutagenesis and used to identify DNA sequences necessary for initiation of transcription, regulation by the specific regulatory locus for ADR2, ADR1, and regulation by the catabolite repression system. The modified ADH genes will be studied by transformation of appropriate yeast mutant strains followed by enzyme and mRNA analysis. The regulatory gene ADR1 will be isolated by transformation of yeast and complementation of function. The cloned ADR1 gene will be used to determine whether the ADR1 locus is transcriptionally controlled by glucose and/or the carbon catabolite system, specifically by CCR1 and related genes regulating catrabolite repressed enzymes. The cloned ADR1 gene will also be used to identify and characterize the ADR1 protein. The DNAse sensitivity of the structural genes in chromatin, and the location of hypersensitive sites near the ADH structural genes will be determined in strains containing normal and mutant alleles of the regulatory loci ADR3, ADR1, and CCR1.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM026079-08
Application #
3273540
Study Section
Genetics Study Section (GEN)
Project Start
1978-12-01
Project End
1986-11-30
Budget Start
1985-12-01
Budget End
1986-11-30
Support Year
8
Fiscal Year
1986
Total Cost
Indirect Cost
Name
University of Washington
Department
Type
Schools of Medicine
DUNS #
135646524
City
Seattle
State
WA
Country
United States
Zip Code
98195
Braun, Katherine A; Dombek, Kenneth M; Young, Elton T (2016) Snf1-Dependent Transcription Confers Glucose-Induced Decay upon the mRNA Product. Mol Cell Biol 36:628-44
Braun, Katherine A; Vaga, Stefania; Dombek, Kenneth M et al. (2014) Phosphoproteomic analysis identifies proteins involved in transcription-coupled mRNA decay as targets of Snf1 signaling. Sci Signal 7:ra64
Braun, Katherine A; Young, Elton T (2014) Coupling mRNA synthesis and decay. Mol Cell Biol 34:4078-87
Parua, Pabitra K; Young, Elton T (2014) Binding and transcriptional regulation by 14-3-3 (Bmh) proteins requires residues outside of the canonical motif. Eukaryot Cell 13:21-30
Parua, Pabitra K; Dombek, Kenneth M; Young, Elton T (2014) Yeast 14-3-3 protein functions as a comodulator of transcription by inhibiting coactivator functions. J Biol Chem 289:35542-60
Braun, Katherine A; Parua, Pabitra K; Dombek, Kenneth M et al. (2013) 14-3-3 (Bmh) proteins regulate combinatorial transcription following RNA polymerase II recruitment by binding at Adr1-dependent promoters in Saccharomyces cerevisiae. Mol Cell Biol 33:712-24
Infante, Juan Jose; Law, G Lynn; Young, Elton T (2012) Analysis of nucleosome positioning using a nucleosome-scanning assay. Methods Mol Biol 833:63-87
Young, Elton T; Zhang, Chao; Shokat, Kevan M et al. (2012) The AMP-activated protein kinase Snf1 regulates transcription factor binding, RNA polymerase II activity, and mRNA stability of glucose-repressed genes in Saccharomyces cerevisiae. J Biol Chem 287:29021-34
Abate, Georgia; Bastonini, Emanuela; Braun, Katherine A et al. (2012) Snf1/AMPK regulates Gcn5 occupancy, H3 acetylation and chromatin remodelling at S. cerevisiae ADY2 promoter. Biochim Biophys Acta 1819:419-27
Parua, Pabitra K; Ryan, Paul M; Trang, Kayla et al. (2012) Pichia pastoris 14-3-3 regulates transcriptional activity of the methanol inducible transcription factor Mxr1 by direct interaction. Mol Microbiol 85:282-98

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