The long-term goal of this research is to understand the regulation of tissue-specific gene expression in mammalian cells. Using cultured hepatoma cells, hepatoma hybrids, and somatic variants as genetic tools, mechanisms that control expression of specific liver genes in hepatic and non-hepatic cells will be defined. Three main areas of research will be pursued. First, genetic experiments will be performed to dissect the extinction phenotypes of intertypic hepatoma hybrids. Hepatoma x fibroblast hybrids and microcell hybrids will be used to define genetic factors involved in the extinction process, and both monogenic and polygenic extinction phenotypes will be explored. In other experiments, the role of transactivator repression in extinction of specific target genes will be assessed by analyzing the phenotypes of hybrids that coexpress one or more cell-specific genes. Hepatoma variants with defects in expression of specific liver genes will also be isolated and characterized, and their phenotypes will be studied by complementation and transfection. Second, mechanisms of transgene extinction will be analyzed, and DNA elements involved in extinction will be defined. Hepatoma transfectants containing stably integrated, position-independent transgenes will be isolated and characterized, and expression of transgene sequences will be monitored in transfectant x fibroblast hybrids. These experiments will identify regulatory elements involved in both position- independent expression and extinction, and they should clarify the connection between chromatin structure and the extinction process. Third, the regulation of chromosomal alleles that have been specifically modified by homologous recombination will be studied. Efficient homologous modification of the human apolipoprotein B and alpha1-antitrypsin genes will be accomplished using novel, recombinationproficient chicken/human microcell hybrids, and the functions of the altered alleles will be assessed after transfer of the modified human chromosomes to expressing and non-expressing mammalian cells. These studies should help define mechanisms of eukaryotic gene control, and they may provide insights into perturbations of those controls that occur in abnormal development and neoplasia.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM026449-23
Application #
6179158
Study Section
Mammalian Genetics Study Section (MGN)
Program Officer
Anderson, James J
Project Start
1987-09-01
Project End
2003-03-31
Budget Start
2000-04-01
Budget End
2001-03-31
Support Year
23
Fiscal Year
2000
Total Cost
$573,129
Indirect Cost
Name
Fred Hutchinson Cancer Research Center
Department
Type
DUNS #
075524595
City
Seattle
State
WA
Country
United States
Zip Code
98109
Zhao, Hui; Friedman, Richard D; Fournier, R E K (2007) The locus control region activates serpin gene expression through recruitment of liver-specific transcription factors and RNA polymerase II. Mol Cell Biol 27:5286-95
Marsden, Mark D; Fournier, R E K (2005) Organization and expression of the human serpin gene cluster at 14q32.1. Front Biosci 10:1768-78
Baxter, Euan W; Cummings, W Jason; Fournier, R E K (2005) Formation of a large, complex domain of histone hyperacetylation at human 14q32.1 requires the serpin locus control region. Nucleic Acids Res 33:3313-22
Namciu, Stephanie J; Friedman, Richard D; Marsden, Mark D et al. (2004) Sequence organization and matrix attachment regions of the human serine protease inhibitor gene cluster at 14q32.1. Mamm Genome 15:162-78
Namciu, Stephanie J; Fournier, R E K (2004) Human matrix attachment regions are necessary for the establishment but not the maintenance of transgene insulation in Drosophila melanogaster. Mol Cell Biol 24:10236-45
Marsden, Mark D; Fournier, R E K (2003) Chromosomal elements regulate gene activity and chromatin structure of the human serpin gene cluster at 14q32.1. Mol Cell Biol 23:3516-26
Antes, T J; Namciu, S J; Fournier, R E et al. (2001) The 5' boundary of the human apolipoprotein B chromatin domain in intestinal cells. Biochemistry 40:6731-42
Rollini, P; Fournier, R E (2000) Differential regulation of gene activity and chromatin structure within the human serpin gene cluster at 14q32.1 in macrophage microcell hybrids. Nucleic Acids Res 28:1767-77
Rollini, P; Xu, L; Fournier, R E (1999) Partial activation of gene activity and chromatin remodeling of the human 14q32.1 serpin gene cluster by HNF-1 alpha and HNF-4 in fibroblast microcell hybrids. Somat Cell Mol Genet 25:207-21
Rollini, P; Fournier, R E (1999) The HNF-4/HNF-1alpha transactivation cascade regulates gene activity and chromatin structure of the human serine protease inhibitor gene cluster at 14q32.1. Proc Natl Acad Sci U S A 96:10308-13

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