The gnd gene of Escherichia coli encodes 6-phosphogluconate dehydrogenase (6PGD), an enzyme of the hexose monophosphate shunt pathway of central intermediary metabolism. The levels of 6PGD are regulated by the cellular growth rate, increasing fourfold with increasing growth rate. Although this variation quantitatively resembles that observed for rRNA and r-proteins, results of our unpublished experiments on the effects of nutritional shifts and amino acid starvation on the rate of 6PGD synthesis demonstrated that the mechanism for growth rate control of 6PGD synthesis is distinct from that which regulates synthesis of rRNA and r-protein and is common to the regulation of many other proteins. The objective of the present proposal is to elucidate the mechanisms underlying the growth rate-dependent control of 6PGD synthesis. Several models for regulation of gnd are presented and used as a conceptual base for the design of experiments. Strains carrying gnd-lac operon and gene fusions will be prepared by the methods of Casadaban using our previously isolated gnd::Mucts mutants. The fusions will be used to determine whether growth rate-dependent control of 6PGD synthesis is transcriptional or post-transcriptional and for the isolation of mutants with mutations in gnd or unlinked to gnd which alter growth rate control. The DNA sequence of the gnd control region will be determined for wild type and mutant genes and for gnd of Salmonella typhimurium, which shows an altered growth rate response. S30 extracts will be prepared from wild type cells grown at different rates and from mutants, and used in DNA-dependent in vitro systems to identify and characterize the regulators of growth rate dependent control of 6PGD synthesis.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM027113-06
Application #
3274530
Study Section
Microbial Physiology and Genetics Subcommittee 2 (MBC)
Project Start
1981-04-01
Project End
1987-08-31
Budget Start
1986-09-01
Budget End
1987-08-31
Support Year
6
Fiscal Year
1986
Total Cost
Indirect Cost
Name
University of Maryland Balt CO Campus
Department
Type
Schools of Arts and Sciences
DUNS #
City
Baltimore
State
MD
Country
United States
Zip Code
21250
Taliaferro, Lanyn P; Keen 3rd, Edward F; Sanchez-Alberola, Neus et al. (2012) Transcription activation by Escherichia coli Rob at class II promoters: protein-protein interactions between Rob's N-terminal domain and the ?(70) subunit of RNA polymerase. J Mol Biol 419:139-57
Zafar, M Ammar; Sanchez-Alberola, Neus; Wolf Jr, Richard E (2011) Genetic evidence for a novel interaction between transcriptional activator SoxS and region 4 of the ýý(70) subunit of RNA polymerase at class II SoxS-dependent promoters in Escherichia coli. J Mol Biol 407:333-53
Zafar, M Ammar; Shah, Ishita M; Wolf Jr, Richard E (2010) Protein-protein interactions between sigma(70) region 4 of RNA polymerase and Escherichia coli SoxS, a transcription activator that functions by the prerecruitment mechanism: evidence for ""off-DNA"" and ""on-DNA"" interactions. J Mol Biol 401:13-32
Griffith, Kevin L; Fitzpatrick, M Megan; Keen 3rd, Edward F et al. (2009) Two functions of the C-terminal domain of Escherichia coli Rob: mediating ""sequestration-dispersal"" as a novel off-on switch for regulating Rob's activity as a transcription activator and preventing degradation of Rob by Lon protease. J Mol Biol 388:415-30
Shah, Ishita M; Wolf Jr, Richard E (2006) Sequence requirements for Lon-dependent degradation of the Escherichia coli transcription activator SoxS: identification of the SoxS residues critical to proteolysis and specific inhibition of in vitro degradation by a peptide comprised of the N-terminal J Mol Biol 357:718-31
Shah, Ishita M; Wolf Jr, Richard E (2006) Inhibition of Lon-dependent degradation of the Escherichia coli transcription activator SoxS by interaction with 'soxbox' DNA or RNA polymerase. Mol Microbiol 60:199-208
Griffith, Kevin L; Becker, Stephen M; Wolf Jr, Richard E (2005) Characterization of TetD as a transcriptional activator of a subset of genes of the Escherichia coli SoxS/MarA/Rob regulon. Mol Microbiol 56:1103-17
Griffith, Kevin L; Shah, Ishita M; Wolf Jr, Richard E (2004) Proteolytic degradation of Escherichia coli transcription activators SoxS and MarA as the mechanism for reversing the induction of the superoxide (SoxRS) and multiple antibiotic resistance (Mar) regulons. Mol Microbiol 51:1801-16
Shah, Ishita M; Wolf Jr, Richard E (2004) Novel protein--protein interaction between Escherichia coli SoxS and the DNA binding determinant of the RNA polymerase alpha subunit: SoxS functions as a co-sigma factor and redeploys RNA polymerase from UP-element-containing promoters to SoxS-dependent p J Mol Biol 343:513-32
Griffith, Kevin L; Wolf Jr, Richard E (2004) Genetic evidence for pre-recruitment as the mechanism of transcription activation by SoxS of Escherichia coli: the dominance of DNA binding mutations of SoxS. J Mol Biol 344:1-10

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