The N gene product of coliphage lambda positively regulates gene expression by suppressing terminators that cause specific termination of gene transcription. For the antitermination of transcription, N requires the products of several nus genes of the host and a nut site encoded in delta. Once RNA polymerase is altered by N at the nut site, transcription does not stop but reads through many terminators. Several types of terminators exist in lambda: N-suppressible terminators, such as tL1, that require host Rho factor and N-suppressible terminators, such as tL2, that function without Rho. Lambda encodes a third kind of terminator that N fails to suppress. The failure of N to suppress this terminator (tb2) may be achieved if this terminator is preceded by a site (nrs) that promotes the release of N from the N-modified transcription complex. This hypothesis will be tested by genetic, structural and biochemical analysis of tb2-nrs region moleculary cloned in a plasmid in between a nut site and the fa1K gene. Mutants of the site and of host will be isolated and biochemically tested. Host factor(s) required for N release will be purified by """"""""complementation assay."""""""" The mechanism of N-mediation antitermination will be studied in vitro in a coupled transcription-translation system by measuring galactokinase whose synthesis is dependent on transcription antitermination at tL1, tL2 or tb2 terminator in the plasmid. The role of nut site and several Nus proteins will be studied. Interaction of various components of antitermination will be analyzed with purified wild type and mutant proteins. The release of N at nrs and its possible role in the catalytic action of N will be investigated.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM028946-06
Application #
3276342
Study Section
Microbial Physiology and Genetics Subcommittee 2 (MBC)
Project Start
1981-04-01
Project End
1987-03-31
Budget Start
1986-04-01
Budget End
1987-03-31
Support Year
6
Fiscal Year
1986
Total Cost
Indirect Cost
Name
University of Connecticut
Department
Type
School of Medicine & Dentistry
DUNS #
City
Farmington
State
CT
Country
United States
Zip Code
06030
Das, Asis; Garcia Mena, Jaime; Jana, Nandan et al. (2003) Genetic and biochemical strategies to elucidate the architecture and targets of a processive transcription antiterminator from bacteriophage lambda. Methods Enzymol 371:438-59
Kulish, D; Lee, J; Lomakin, I et al. (2000) The functional role of basic patch, a structural element of Escherichia coli transcript cleavage factors GreA and GreB. J Biol Chem 275:12789-98
Toulme, F; Mosrin-Huaman, C; Sparkowski, J et al. (2000) GreA and GreB proteins revive backtracked RNA polymerase in vivo by promoting transcript trimming. EMBO J 19:6853-9
Garcia-Mena, J; Das, A; Sanchez-Trujillo, A et al. (1999) A novel mutation in the KH domain of polynucleotide phosphorylase affects autoregulation and mRNA decay in Escherichia coli. Mol Microbiol 33:235-48
Rees, W A; Weitzel, S E; Das, A et al. (1997) Regulation of the elongation-termination decision at intrinsic terminators by antitermination protein N of phage lambda. J Mol Biol 273:797-813
Van Gilst, M R; Rees, W A; Das, A et al. (1997) Complexes of N antitermination protein of phage lambda with specific and nonspecific RNA target sites on the nascent transcript. Biochemistry 36:1514-24
Das, A; Pal, M; Mena, J G et al. (1996) Components of multiprotein-RNA complex that controls transcription elongation in Escherichia coli phage lambda. Methods Enzymol 274:374-402
Liu, K; Zhang, Y; Severinov, K et al. (1996) Role of Escherichia coli RNA polymerase alpha subunit in modulation of pausing, termination and anti-termination by the transcription elongation factor NusA. EMBO J 15:150-61
Rees, W A; Weitzel, S E; Yager, T D et al. (1996) Bacteriophage lambda N protein alone can induce transcription antitermination in vitro. Proc Natl Acad Sci U S A 93:342-6
Das, A; Barik, S; Ghosh, B et al. (1996) Immunoprinting: a technique used to study dynamic protein-nucleic acid interactions within transcription elongation complex. Methods Enzymol 274:363-74

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