The animal oocyte is a highly differentiated cell in which a number of cellular organelles are accumulated for distribution to the cells of the developing embryo. The overproduction of mitochondria is particularly interesting, since this organelle contains a distinct genome. Thus, mitochondrial biogenesis requires the coordinated activity of the nuclear and mitochondrial genomes. The Xenopus (African frog) oocyte, a well-studied model for oogenesis, contains as much mitochondrial DNA (mtDNA) as 100,000 somatic cells. Transcription and replication of Xenopus mtDNA are accomplished by enzymes produced by nuclear genes, including the mitochondrial RNA and DNA polymerases. Assay methods will be developed to permit study of the transcription and replication of mtDNA using in vitro reactions. The nucleotide sequences required for control of both transcription and replication of Xenopus mtDNA will be determined. The RNA and DNA polymerases will be purified, as will a number of accessory proteins required for efficient nucleic acid synthesis, such as type I topoisomerase and mtDNA binding proteins. Antibodies raised against these proteins will be used to confirm their intramitochondrial localization in situ using immunofluorescence microscopy and to follow the rate of accumulation of the proteins during development of the oocyte. The antisera will also be used as probes to identify cDNA clones for the respective mRNAs in an expression library. These cDNA clones will be used to study the transcription of nuclear genes encoding these important regulatory proteins.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
2R01GM029681-06
Application #
3277295
Study Section
Physiological Chemistry Study Section (PC)
Project Start
1981-07-01
Project End
1991-06-30
Budget Start
1986-07-01
Budget End
1987-06-30
Support Year
6
Fiscal Year
1986
Total Cost
Indirect Cost
Name
State University New York Stony Brook
Department
Type
Schools of Medicine
DUNS #
804878247
City
Stony Brook
State
NY
Country
United States
Zip Code
11794
Bogenhagen, Daniel F (2009) Biochemical isolation of mtDNA nucleoids from animal cells. Methods Mol Biol 554:3-14
Liu, Pingfang; Qian, Limin; Sung, Jung-Suk et al. (2008) Removal of oxidative DNA damage via FEN1-dependent long-patch base excision repair in human cell mitochondria. Mol Cell Biol 28:4975-87
Yakubovskaya, Elena; Lukin, Mark; Chen, Zhixin et al. (2007) The EM structure of human DNA polymerase gamma reveals a localized contact between the catalytic and accessory subunits. EMBO J 26:4283-91
Wang, Yousong; Bogenhagen, Daniel F (2006) Human mitochondrial DNA nucleoids are linked to protein folding machinery and metabolic enzymes at the mitochondrial inner membrane. J Biol Chem 281:25791-802
Yakubovskaya, Elena; Chen, Zhixin; Carrodeguas, Jose A et al. (2006) Functional human mitochondrial DNA polymerase gamma forms a heterotrimer. J Biol Chem 281:374-82
Bogenhagen, Daniel F; Wang, Yousong; Shen, Ellen L et al. (2003) Protein components of mitochondrial DNA nucleoids in higher eukaryotes. Mol Cell Proteomics 2:1205-16
Bogenhagen, Daniel F (2002) Purification of mitochondria for enzymes involved in nucleic acid transactions. Methods Mol Biol 197:199-210
Perez-Jannotti, R M; Klein, S M; Bogenhagen, D F (2001) Two forms of mitochondrial DNA ligase III are produced in Xenopus laevis oocytes. J Biol Chem 276:48978-87
Carrodeguas, J A; Theis, K; Bogenhagen, D F et al. (2001) Crystal structure and deletion analysis show that the accessory subunit of mammalian DNA polymerase gamma, Pol gamma B, functions as a homodimer. Mol Cell 7:43-54
Shen, E L; Bogenhagen, D F (2001) Developmentally-regulated packaging of mitochondrial DNA by the HMG-box protein mtTFA during Xenopus oogenesis. Nucleic Acids Res 29:2822-8

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