The major objective of this proposal is to elucidate the mechanisms used by bacteria to initiate the degradation of aromatic hydrocarbons. These studies will continue to provide, basic health-related information on oxygen fixation, the biodegradation of environmental pollutants and the development of new procedures for the synthesis of pharmaceutical products such as prostaglandins, inositol phosphates and anti tumor compounds. Pseudomonas putida F1 and Pseudomonas sp. NCIB 9816 both utilize multicomponent enzyme systems to incorporate molecular oxygen into toluene and naphthalene respectively. Toluene dioxygenase consists of three components that participate in the transfer of electrons from NADH to the terminal dioxygenase which oxidizes toluene to enantiomerically-pure (+)- cis-(1S,2R)-dihydroxy-3-methylcyclohexa-3,5-diene. Naphthalene dioxygenase utilizes an analogous system to oxidize naphthalene to (+)-cis-(1R,2S)- dihydroxy-1,2-dihydronaphthalene. The properties of the two enzyme systems are different. The project involves the use of recombinant strains of E. coli, to provide significant quantities of individual proteins for studies on: 1. The protein-protein interactions and mechanisms of electron transport from NADH to the terminal dioxygenases. 2. Electron transfer, substrate binding and subunit interactions in the terminal dioxygenase components of toluene and naphthalene dioxygenases. The procedures involved include chemical coupling, spectrophotometric and electron paramagnetic resonance (EPR) studies in the presence and absence of monoclonal antibodies raised against the individual components of both dioxygenases. 3. The oxidation of indan by the cloned naphthalene dioxygenase system. Products will be isolated by high pressure liquid chromatography and the enantiomeric composition of chiral products will be determined by conventional chemical techniques. 4. The biophysical properties of the iron-sulfur clusters and iron in the molecular events leading to the stereospecific incorporation of molecular oxygen into toluene and naphthalene. These will be collaborative studies with scientists who are acknowledged experts in the following techniques: EPR, magnetic circular dichroism, resonance Ramon, Mossbauer, ENDOR and EXAFS spectroscopies. Additional collaborative studies will focus on the crystallization and use of X-ray diffraction technology to determine the structural properties of the individual components of toluene and naphthalene dioxygenases.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
2R01GM029909-12
Application #
3277579
Study Section
Microbial Physiology and Genetics Subcommittee 2 (MBC)
Project Start
1988-08-01
Project End
1995-11-30
Budget Start
1991-12-15
Budget End
1992-11-30
Support Year
12
Fiscal Year
1992
Total Cost
Indirect Cost
Name
University of Iowa
Department
Type
Schools of Medicine
DUNS #
041294109
City
Iowa City
State
IA
Country
United States
Zip Code
52242
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Karlsson, Andreas; Parales, Juan V; Parales, Rebecca E et al. (2005) NO binding to naphthalene dioxygenase. J Biol Inorg Chem 10:483-9
Karlsson, Andreas; Parales, Juanito V; Parales, Rebecca E et al. (2003) Crystal structure of naphthalene dioxygenase: side-on binding of dioxygen to iron. Science 299:1039-42
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Yu, C L; Parales, R E; Gibson, D T (2001) Multiple mutations at the active site of naphthalene dioxygenase affect regioselectivity and enantioselectivity. J Ind Microbiol Biotechnol 27:94-103
Wolfe, M D; Parales, J V; Gibson, D T et al. (2001) Single turnover chemistry and regulation of O2 activation by the oxygenase component of naphthalene 1,2-dioxygenase. J Biol Chem 276:1945-53
Parales, R E; Lee, K; Resnick, S M et al. (2000) Substrate specificity of naphthalene dioxygenase: effect of specific amino acids at the active site of the enzyme. J Bacteriol 182:1641-9
Gibson, D T; Parales, R E (2000) Aromatic hydrocarbon dioxygenases in environmental biotechnology. Curr Opin Biotechnol 11:236-43
Parales, R E; Resnick, S M; Yu, C L et al. (2000) Regioselectivity and enantioselectivity of naphthalene dioxygenase during arene cis-dihydroxylation: control by phenylalanine 352 in the alpha subunit. J Bacteriol 182:5495-504
Carredano, E; Karlsson, A; Kauppi, B et al. (2000) Substrate binding site of naphthalene 1,2-dioxygenase: functional implications of indole binding. J Mol Biol 296:701-12

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