The primary objective of the proposed experimental plan is to elucidate the mechanism by which a complex cis-acting element mediates activation of expression of the yeast enolase gene ENO2. The GCR1 gene encodes a positive regulatory protein which is required for high level transcription of yeast glycolytic genes including ENO2. Sequences that mediate GCR1-dependent activation of ENO2 expression have been identified. This regulatory element (GCR1-dependent UAS element) contains two binding sites for RAP1 protein and a binding site for ABF1 protein that play important roles in modulating the transcriptional activity of the regulatory element. GCR1 protein will be purified and binding sites for GCR1 protein will be mapped within the GCR1-dependent UAS element. The role of GCR1 binding, alone and in combination with ABF1 and RAP1, in modulating the activity of truncated, mutant, and full length versions of the GCR1-dependent UAS element will be tested in vivo. Dominant mutations in the SGC1 gene were previously identified as suppressors of both growth and transcriptional defects caused by a gcr1 null mutation. SGC1, encodes a member of the basic-helix-loop-helix (bHLH) family of DNA binding proteins. SGC1 bHLH protein(s) will be purified and binding sites for SGC1 bHLH protein(s) will be mapped within or adjacent to the GCR1-dependent UAS element. The role of SGC1 bHLH protein binding, alone and in combination with ABF1, RAP1, and GCR1, in modulating the activity of the GCR1-dependent UAS element will be studied in vivo to determine how these proteins act in combination to regulate activation of ENO2 expression. The mechanism whereby GCR1, SGC1, and RAP1 modulate ENO2 UAS element-dependent activation of transcription will be further studied using in vitro transcription assays and purified GCR1, SGC1, and RAP1 proteins. The transcriptional activities of two molecular forms of GCR1 protein encoded by two distinct GCR1 transcripts will be compared. A collection of gcr1 suppressor mutants will be screened to distinguish novel genes that modulate the transcriptional activity of the GCR1-dependent UAS element from ENO2. Finally, recent experiments show that the yeast SIN3 and SIN4 gene products function together to regulate the biochemical properties of REB1 and RAP1 DNA proteins. Genetic studies showed that sin3 or sin4 null mutations dramatically altered the biological activities of a RAP1-dependent UAS element, the REB1-dependent ENO1 URS element, and the REB1-dependent yeast ribosomal enhancer/terminator element. Although little is known about their mechanism of action, REB1 and RAP1 appear to be global regulators of yeast gene expression (RAP1 modulates the activity of the GCR1-dependent UAS element described above). Experiments are proposed to investigate the mechanism whereby SIN3 and SIN4 proteins regulate the activities of REB1 and RAP1. The long term goal of this investigation is to understand the mechanisms whereby multiple regulatory proteins act in concert to modulate eucaryotic gene expression.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
2R01GM030307-12A1
Application #
3277959
Study Section
Molecular Biology Study Section (MBY)
Project Start
1981-05-01
Project End
1996-11-30
Budget Start
1992-12-01
Budget End
1993-11-30
Support Year
12
Fiscal Year
1993
Total Cost
Indirect Cost
Name
University of California Davis
Department
Type
Schools of Medicine
DUNS #
094878337
City
Davis
State
CA
Country
United States
Zip Code
95618
Nishi, K; Park, C S; Pepper, A E et al. (1995) The GCR1 requirement for yeast glycolytic gene expression is suppressed by dominant mutations in the SGC1 gene, which encodes a novel basic-helix-loop-helix protein. Mol Cell Biol 15:2646-53
Kang, J J; Yokoi, T J; Holland, M J (1995) Binding sites for abundant nuclear factors modulate RNA polymerase I-dependent enhancer function in Saccharomyces cerevisiae. J Biol Chem 270:28723-32
Carmen, A A; Holland, M J (1994) The upstream repression sequence from the yeast enolase gene ENO1 is a complex regulatory element that binds multiple trans-acting factors including REB1. J Biol Chem 269:9790-7
Willett, C E; Gelfman, C M; Holland, M J (1993) A complex regulatory element from the yeast gene ENO2 modulates GCR1-dependent transcriptional activation. Mol Cell Biol 13:2623-33
Holland, J P; Brindle, P K; Holland, M J (1990) Sequences within an upstream activation site in the yeast enolase gene ENO2 modulate repression of ENO2 expression in strains carrying a null mutation in the positive regulatory gene GCR1. Mol Cell Biol 10:4863-71
Brindle, P K; Holland, J P; Willett, C E et al. (1990) Multiple factors bind the upstream activation sites of the yeast enolase genes ENO1 and ENO2: ABFI protein, like repressor activator protein RAP1, binds cis-acting sequences which modulate repression or activation of transcription. Mol Cell Biol 10:4872-85
Yip, M T; Holland, M J (1989) In vitro RNA processing generates mature 3' termini of yeast 35 and 25 S ribosomal RNAs. J Biol Chem 264:4045-51
Mestel, R; Yip, M; Holland, J P et al. (1989) Sequences within the spacer region of yeast rRNA cistrons that stimulate 35S rRNA synthesis in vivo mediate RNA polymerase I-dependent promoter and terminator activities. Mol Cell Biol 9:1243-54
Holland, M J; Yokoi, T; Holland, J P et al. (1987) The GCR1 gene encodes a positive transcriptional regulator of the enolase and glyceraldehyde-3-phosphate dehydrogenase gene families in Saccharomyces cerevisiae. Mol Cell Biol 7:813-20
Cohen, R; Yokoi, T; Holland, J P et al. (1987) Transcription of the constitutively expressed yeast enolase gene ENO1 is mediated by positive and negative cis-acting regulatory sequences. Mol Cell Biol 7:2753-61

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