The overall goal of this project is to evaluate statistical genetic methods for detecting, characterizing, and mapping the genes that influence complex diseases and their precursors and risk factors. We will pursue this goal by: (l) Continuing the organization of the Genetic Analysis Workshops (GAWs). The Genetic Analysis Workshops are a collaborative effort among genetic epidemiologists to evaluate and compare statistical genetic methods. For each GAW, topics are chosen for their relevance to current analytical issues in genetic epidemiology, and sets of computer-simulated or real data are distributed to investigators worldwide. Results of analyses are discussed and compared at a 2 1/2 day meeting. GAW10 will be held in 1996, and GAW11, in 1998. Planning and data distribution for GAW12 will be ongoing by the end of the requested period of support in 2000. (2) Conducting evaluations of methods of genetic analysis. Some issues concerning the strengths and limitations of statistical genetic methods can be more readily addressed outside a workshop setting. Using computer- simulated data, we will address questions of power or sensitivity, specificity, and robustness of various analytical methods. Because many current analytical problems in genetic epidemiology involve complex diseases with associated quantitative precursors and risk factors, we will focus on analysis of such quantitative traits. We will evaluate (l) the utility of multivariate linkage analysis for detecting loci that contribute to quantitative traits, and (2) the effects on statistical inference of including or disregarding genotype x environment (GxE) interaction. This research will complement the Workshops in the sense that many of the same simulation programs and data sets will be used, and special problems that are revealed in the Workshops will be pursued in greater detail. (3) Distributing simulation programs, simulated data, and programs for genetic analysis. As a result of our efforts in generating data for the GAWs and in evaluating methods of genetic analysis, we are developing computer programs and simulated data sets that are of potential value to other investigators. We will continue to document these programs and data sets and provide them to interested investigators.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM031575-16
Application #
2770918
Study Section
Epidemiology and Disease Control Subcommittee 2 (EDC)
Project Start
1983-04-01
Project End
1999-08-31
Budget Start
1998-09-01
Budget End
1999-08-31
Support Year
16
Fiscal Year
1998
Total Cost
Indirect Cost
Name
Southwest Foundation for Biomedical Research
Department
Type
DUNS #
City
San Antonio
State
TX
Country
United States
Zip Code
78245
Konigorski, Stefan; Wang, Yuan; Cigsar, Candemir et al. (2018) Estimating and testing direct genetic effects in directed acyclic graphs using estimating equations. Genet Epidemiol 42:174-186
Aslibekyan, Stella; Almasy, Laura; Province, Michael A et al. (2018) Data for GAW20: genome-wide DNA sequence variation and epigenome-wide DNA methylation before and after fenofibrate treatment in a family study of metabolic phenotypes. BMC Proc 12:35
Wang, Xuexia; Boekstegers, Felix; Brinster, Regina (2018) Methods and results from the genome-wide association group at GAW20. BMC Genet 19:79
Fuady, Angga M; Tissier, Renaud L M; Houwing-Duistermaat, Jeanine J (2018) Genome-wide analysis in multiple-case families: assessing the relationship between triglyceride and methylation. BMC Proc 12:33
Cherlin, Svetlana; Wang, Maggie Haitian; Bickeböller, Heike et al. (2018) Detecting responses to treatment with fenofibrate in pedigrees. BMC Genet 19:64
Vander Woude, Jason; Huisman, Jordan; Vander Berg, Lucas et al. (2018) Evaluating the performance of gene-based tests of genetic association when testing for association between methylation and change in triglyceride levels at GAW20. BMC Proc 12:50
Piette, Elizabeth R; Moore, Jason H (2018) Identification of epistatic interactions between the human RNA demethylases FTO and ALKBH5 with gene set enrichment analysis informed by differential methylation. BMC Proc 12:59
Cox, Jiayi Wu; Patel, Devanshi; Chung, Jaeyoon et al. (2018) An efficient analytic approach in genome-wide identification of methylation quantitative trait loci response to fenofibrate treatment. BMC Proc 12:44
Das, Sarmistha; Mondal, Pronoy Kanti; Ghosh, Saurabh et al. (2018) Family-based genome-wide association of inflammation biomarkers and fenofibrate treatment response in the GOLDN study. BMC Proc 12:41
Chen, Yuning; Peloso, Gina M; Dupuis, Josée (2018) Evaluation of a phenotype imputation approach using GAW20 simulated data. BMC Proc 12:56

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