The overall goal of this project is to evaluate statistical genetic methods for detecting, characterizing, and mapping the genes that influence complex diseases and their precursors and risk factors. We will pursue this goal by: (l) Continuing the organization of the Genetic Analysis Workshops (GAWs). The Genetic Analysis Workshops are a collaborative effort among genetic epidemiologists to evaluate and compare statistical genetic methods. For each GAW, topics are chosen for their relevance to current analytical issues in genetic epidemiology, and sets of computer-simulated or real data are distributed to investigators worldwide. Results of analyses are discussed and compared at a 2 1/2 day meeting. GAW10 will be held in 1996, and GAW11, in 1998. Planning and data distribution for GAW12 will be ongoing by the end of the requested period of support in 2000. (2) Conducting evaluations of methods of genetic analysis. Some issues concerning the strengths and limitations of statistical genetic methods can be more readily addressed outside a workshop setting. Using computer- simulated data, we will address questions of power or sensitivity, specificity, and robustness of various analytical methods. Because many current analytical problems in genetic epidemiology involve complex diseases with associated quantitative precursors and risk factors, we will focus on analysis of such quantitative traits. We will evaluate (l) the utility of multivariate linkage analysis for detecting loci that contribute to quantitative traits, and (2) the effects on statistical inference of including or disregarding genotype x environment (GxE) interaction. This research will complement the Workshops in the sense that many of the same simulation programs and data sets will be used, and special problems that are revealed in the Workshops will be pursued in greater detail. (3) Distributing simulation programs, simulated data, and programs for genetic analysis. As a result of our efforts in generating data for the GAWs and in evaluating methods of genetic analysis, we are developing computer programs and simulated data sets that are of potential value to other investigators. We will continue to document these programs and data sets and provide them to interested investigators.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM031575-19
Application #
6385474
Study Section
Epidemiology and Disease Control Subcommittee 2 (EDC)
Program Officer
Eckstrand, Irene A
Project Start
1983-04-01
Project End
2003-08-31
Budget Start
2001-09-01
Budget End
2002-08-31
Support Year
19
Fiscal Year
2001
Total Cost
$390,064
Indirect Cost
Name
Southwest Foundation for Biomedical Research
Department
Type
DUNS #
City
San Antonio
State
TX
Country
United States
Zip Code
78245
Ghosh, Saurabh; Fardo, David W (2018) Association analyses of repeated measures on triglyceride and high-density lipoprotein levels: insights from GAW20. BMC Genet 19:73
Auerbach, Jonathan; Howey, Richard; Jiang, Lai et al. (2018) Causal modeling in a multi-omic setting: insights from GAW20. BMC Genet 19:74
Sarnowski, Chloé; Lent, Samantha; Dupuis, Josée (2018) Investigation of parent-of-origin effects induced by fenofibrate treatment on triglycerides levels. BMC Genet 19:83
Darst, Burcu F; Malecki, Kristen C; Engelman, Corinne D (2018) Using recursive feature elimination in random forest to account for correlated variables in high dimensional data. BMC Genet 19:65
LeBlanc, Marissa; Nustad, Haakon E; Zucknick, Manuela et al. (2018) Quality control for Illumina 450K methylation data in the absence of iDat files using correlation structure in pedigrees and repeated measures. BMC Genet 19:66
Wu, Chong; Park, Jun Young; Guan, Weihua et al. (2018) An adaptive gene-based test for methylation data. BMC Proc 12:60
Fernández-Rhodes, Lindsay; Howard, Annie Green; Tao, Ran et al. (2018) Characterization of the contribution of shared environmental and genetic factors to metabolic syndrome methylation heritability and familial correlations. BMC Genet 19:69
Zhao, Kaiqiong; Jiang, Lai; Klein, Kathleen et al. (2018) CpG-set association assessment of lipid concentration changes and DNA methylation. BMC Proc 12:30
Darst, Burcu; Engelman, Corinne D; Tian, Ye et al. (2018) Data mining and machine learning approaches for the integration of genome-wide association and methylation data: methodology and main conclusions from GAW20. BMC Genet 19:76
Park, Jun Young; Wu, Chong; Pan, Wei (2018) An adaptive gene-level association test for pedigree data. BMC Genet 19:68

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