The long term goal is to study and characterize the pre-mRNA splicing enzymes from human cells. Splicing is a critical step in maturation of mRNA precursors and most likely plays a major role in regulation of gene expression. The importance of studies on pre-mRNA splicing and their relation to clinical problems is underscored by the fact that several forms of alpha- and beta thalassemia result from aberrant splicing of human globin pre-mRNA. To elucidate the details of the splicing reaction and to characterize the splicing factors involved in this process the following specific aims are proposed: (1) To determine the effects of the structure of the pre-mRNA substrate on the efficiency of the splicing reaction. In particular the effects on the efficiency of splicing of the sequences surrounding the introns will be studied. 2. To study the in vitro splicing reaction in homologous systems. The hypothesis will be tested that in vitro splicing is more efficient in homologous systems or in extracts prepared from cells which express abnormally high levels of mRNA. 3. To purify and identify selected splicing factors. This study will focus on the activities involved in cleavage at the 5' splice site and on the splicing factor which can rescue a low salt inactivated splicing extract. Since sn- and hnRNPs appear to be involved in splicing, partially purified fractions will be tested for presence of sn- and hnRNPs to determine their specific functions in the splicing reaction.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM032994-06
Application #
3282307
Study Section
Molecular Biology Study Section (MBY)
Project Start
1983-12-01
Project End
1990-11-30
Budget Start
1988-12-01
Budget End
1989-11-30
Support Year
6
Fiscal Year
1989
Total Cost
Indirect Cost
Name
University of North Carolina Chapel Hill
Department
Type
Schools of Medicine
DUNS #
078861598
City
Chapel Hill
State
NC
Country
United States
Zip Code
27599
Tian, H; Kole, R (2001) Strong RNA splicing enhancers identified by a modified method of cycled selection interact with SR protein. J Biol Chem 276:33833-9
Sierakowska, H; Sambade, M J; Schumperli, D et al. (1999) Sensitivity of splice sites to antisense oligonucleotides in vivo. RNA 5:369-77
Dominski, Z; Kole, R (1996) Effects of exon sequences on splicing of model pre-mRNA substrates in vitro. Acta Biochim Pol 43:161-73
Dominski, Z; Ferree, P; Kole, R (1996) Antisense 2'-O-methyloligoribonucleotides hybridized to RNA block a nuclear, ATP-dependent 3'-5' exonuclease. Antisense Nucleic Acid Drug Dev 6:37-45
Tian, H; Kole, R (1995) Selection of novel exon recognition elements from a pool of random sequences. Mol Cell Biol 15:6291-8
Dominski, Z; Kole, R (1994) Identification and characterization by antisense oligonucleotides of exon and intron sequences required for splicing. Mol Cell Biol 14:7445-54
Dominski, Z; Kole, R (1994) Identification of exon sequences involved in splice site selection. J Biol Chem 269:23590-6
Dominski, Z; Kole, R (1992) Cooperation of pre-mRNA sequence elements in splice site selection. Mol Cell Biol 12:2108-14
Shukla, R R; Dominski, Z; Zwierzynski, T et al. (1990) Inactivation of splicing factors in HeLa cells subjected to heat shock. J Biol Chem 265:20377-83
Sierakowska, H; Shukla, R R; Dominski, Z et al. (1989) Inhibition of pre-mRNA splicing by 5-fluoro-, 5-chloro-, and 5-bromouridine. J Biol Chem 264:19185-91

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