The DNA in all eukaryotic cells is located in the nucleus. The outer boundary of the nucleus is defined by a complex structure called the nuclear envelope. The envelope is a semi-permeable barrier composed of two membrane bilayers linked to each other by nuclear pores. The envelope regulates traffic of molecules into and out of the nucleus and acts as a structural platform for the organization of DNA. Although the envelope has been implicated as playing a role in chromatin function, relatively little is known about how this occurs. This is largely due to the fact that the overall complexity of the nucleus has made it impossible to study a subset of interactions by using intact nuclei. To circumvent this problem we have been developing a simple model system using purified components to identify the structural components which mediate binding of chromatin to the nuclear envelope and to identify the proteins which regulate these interactions. the system consists of membrane vesicles, isolated from Xenopus eggs, which will bind to chromatin and fuse to form an intact nuclear envelope. Using this system we have shown that the interaction between the vesicles and chromatin is mediated by a membrane receptor and a chromatin bound protein. Further, we have shown that the interaction between these two proteins is regulated by a kinase/phosphatase system which phosphorylates the receptor. In this grant we propose to use this simple model system to investigate in detail how membrane-chromatin interactions occur, how they are regulated, and whether changes in these associations effect nuclear functions such as chromosome decondensation and DNA replication. Specifically, we propose to: 1) isolate the receptor and chromatin binding protein which mediate chromatin- membrane association; 2) isolate the kinase and phosphatase which regulate this association; 3) combine these purified components together to reconstruct a model system for studying chromatin-membrane dynamics; 4) determine whether changes in the dynamics of this system under """"""""real"""""""" conditions perturbs nuclear function such as chromosome condensation and DNA replication. The results from these studies will provide valuable information about envelope function as well as extend our knowledge about how higher order DNA structure contributes to DNA function.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM033523-11
Application #
2177044
Study Section
Molecular Cytology Study Section (CTY)
Project Start
1984-04-01
Project End
1996-03-31
Budget Start
1994-04-01
Budget End
1995-03-31
Support Year
11
Fiscal Year
1994
Total Cost
Indirect Cost
Name
University of California San Diego
Department
Biology
Type
Schools of Arts and Sciences
DUNS #
077758407
City
La Jolla
State
CA
Country
United States
Zip Code
92093
Zeitlin, Samantha G; Patel, Sheetal; Kavli, Bodil et al. (2005) Xenopus CENP-A assembly into chromatin requires base excision repair proteins. DNA Repair (Amst) 4:760-72
Harvey, Kevin J; Newport, John (2003) Metazoan origin selection: origin recognition complex chromatin binding is regulated by CDC6 recruitment and ATP hydrolysis. J Biol Chem 278:48524-8
Harvey, Kevin J; Newport, John (2003) CpG methylation of DNA restricts prereplication complex assembly in Xenopus egg extracts. Mol Cell Biol 23:6769-79
Yamaguchi, Ryuji; Newport, John (2003) A role for Ran-GTP and Crm1 in blocking re-replication. Cell 113:115-25
Hekmat-Nejad, M; You, Z; Yee, M C et al. (2000) Xenopus ATR is a replication-dependent chromatin-binding protein required for the DNA replication checkpoint. Curr Biol 10:1565-73
Michael, W M; Ott, R; Fanning, E et al. (2000) Activation of the DNA replication checkpoint through RNA synthesis by primase. Science 289:2133-7
Lin, X H; Walter, J; Scheidtmann, K et al. (1998) Protein phosphatase 2A is required for the initiation of chromosomal DNA replication. Proc Natl Acad Sci U S A 95:14693-8
Walter, J; Sun, L; Newport, J (1998) Regulated chromosomal DNA replication in the absence of a nucleus. Mol Cell 1:519-29
Guadagno, T M; Newport, J W (1996) Cdk2 kinase is required for entry into mitosis as a positive regulator of Cdc2-cyclin B kinase activity. Cell 84:73-82
Howe, J A; Newport, J W (1996) A developmental timer regulates degradation of cyclin E1 at the midblastula transition during Xenopus embryogenesis. Proc Natl Acad Sci U S A 93:2060-4

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