The long range goal of this project is to study structure-function relationships in cytochromes P450 and related proteins using x-ray crystallography, molecular biology, and biochemistry. This competitive renewal focuses on the following areas: substrate binding, electron transfer, enzyme intermediates, and selected new structures. A comparison of the P450BM3 heme domain with and without substrate bound reveals large conformational differences, whose relevance will be probed by a combination of site directed mutagenesis and new crystal structures. During this past funding period, Dr. Poulos solved the first P450 electron transfer complex that formed between P450BM-3 and its FMN domain. The functional relevance of the model will be tested by a combination of mutagenesis, chemical modification, and laser flash photolysis. A new addition to the project is heme oxygenase, the enzyme responsible for the first step in heme degradation. Various intermediates can be trapped in the crystalline state and the structures of these intermediates will be determined. Lastly, Dr. Poulos will solve the structure of P450s that exhibit interesting and unusual properties. These studies will help to broaden our understanding on the diversity of P450 functional properties.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
2R01GM033688-17
Application #
6325009
Study Section
Molecular and Cellular Biophysics Study Section (BBCA)
Program Officer
Lewis, Catherine D
Project Start
1987-03-01
Project End
2005-02-28
Budget Start
2001-03-01
Budget End
2002-02-28
Support Year
17
Fiscal Year
2001
Total Cost
$294,373
Indirect Cost
Name
University of California Irvine
Department
Biochemistry
Type
Schools of Arts and Sciences
DUNS #
161202122
City
Irvine
State
CA
Country
United States
Zip Code
92697
Kaur, Parminder; Chamberlin, A Richard; Poulos, Thomas L et al. (2016) Structure-Based Inhibitor Design for Evaluation of a CYP3A4 Pharmacophore Model. J Med Chem 59:4210-20
Poulos, Thomas L (2014) Heme enzyme structure and function. Chem Rev 114:3919-62
Sevrioukova, Irina F; Poulos, Thomas L (2014) Ritonavir analogues as a probe for deciphering the cytochrome P450 3A4 inhibitory mechanism. Curr Top Med Chem 14:1348-55
Madrona, Yarrow; Hollingsworth, Scott A; Tripathi, Sarvind et al. (2014) Crystal structure of cindoxin, the P450cin redox partner. Biochemistry 53:1435-46
Batabyal, Dipanwita; Li, Huiying; Poulos, Thomas L (2013) Synergistic effects of mutations in cytochrome P450cam designed to mimic CYP101D1. Biochemistry 52:5396-402
Tripathi, Sarvind; Li, Huiying; Poulos, Thomas L (2013) Structural basis for effector control and redox partner recognition in cytochrome P450. Science 340:1227-30
Poulos, Thomas L; Madrona, Yarrow (2013) Oxygen activation and redox partner binding in cytochromes P450. Biotechnol Appl Biochem 60:128-33
Batabyal, Dipanwita; Poulos, Thomas L (2013) Crystal structures and functional characterization of wild-type CYP101D1 and its active site mutants. Biochemistry 52:8898-906
Sevrioukova, Irina F; Poulos, Thomas L (2013) Dissecting cytochrome P450 3A4-ligand interactions using ritonavir analogues. Biochemistry 52:4474-81
Sevrioukova, Irina F; Poulos, Thomas L (2013) Pyridine-substituted desoxyritonavir is a more potent inhibitor of cytochrome P450 3A4 than ritonavir. J Med Chem 56:3733-41

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