During the past grant period(2 years) the applicant has isolated the NADH dehydrogenase complex of Paracoccus denitrificans and characterized it with respect to enzymic activities, polypeptide composition, content of non-heme iron and labile sulfide, and the nature of flavin. he has also shown that dicyclohexylcarbodiimide inhibits the NADH-Q reductase activities of those organisms which contain an energy coupling site 1 (mammals, P. denitrificans, E. coli, T. thermophilus) but not NADH-Q reductase activities of those that lack coupling site 1 (S. cerevisiae, B. subtilis). He has further shown in mammalian complex I that DCCD inhibition of NADH-Q reductase is correlated with labeling of a polypeptide of Mr=29,000 with [14C]DCCD. Studies planned for this grant period are as follows: (I) Resolution of the isolated NADH dehydrogenase complex of Paracoccus by detergents and/or strong chaotropes and assignment of redox centers (FMN, four FeS clusters) to subunits and determination of substrate- binding subunits. (II) Reconstitution of the NADH dehydrogenase complex from the resolved fragments (or subunits) and determination of the minimum number of subunits required for reconstitution of electron transfer and proton translocation and for interaction of the complex with the bc1 complex. (III) Reconstitution of rotenone-sensitivity and H+ translocation function of NADH dehydrogenase complex from the isolated NADH dehydrogenase complex + phospholipids, the be1 complex of Paracoccus, and/or polypeptide that might have been separated during purification. (IV) Study of the sequence of electron carriers in NADH dehydrogenase complex, using chemical modification techniques to achieve interruption of electron transfer at various points. (V) Determination and characterization of the DCCD binding subunit in the NADH dehydrogenase complex of Parcoccus and other organisms that contain energy coupling site 1. (VI) Isolation of rotenone-insensitive and Q- deficient mutants. Study of the relationships among energy coupling site 1, FeS cluster N2 and rotenone sensitivity, using rotenone-sensitive membranes and rotenone-insensitive mutants. Study of the role of ubiquinone-10 in electron transfer and proton translocation at energy coupling site 1 with the use of Q-deficient mutants.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM033712-05
Application #
3283653
Study Section
Physical Biochemistry Study Section (PB)
Project Start
1984-12-01
Project End
1991-11-30
Budget Start
1990-12-01
Budget End
1991-11-30
Support Year
5
Fiscal Year
1991
Total Cost
Indirect Cost
Name
La Jolla Institute
Department
Type
DUNS #
City
La Jolla
State
CA
Country
United States
Zip Code
92037
Sinha, Prem Kumar; Castro-Guerrero, Norma; Patki, Gaurav et al. (2015) Conserved amino acid residues of the NuoD segment important for structure and function of Escherichia coli NDH-1 (complex I). Biochemistry 54:753-64
Sato, Motoaki; Torres-Bacete, Jesus; Sinha, Prem Kumar et al. (2014) Essential regions in the membrane domain of bacterial complex I (NDH-1): the machinery for proton translocation. J Bioenerg Biomembr 46:279-87
Barker, Clive S; Meshcheryakova, Irina V; Sasaki, Toshio et al. (2014) Randomly selected suppressor mutations in genes for NADH?:?quinone oxidoreductase-1, which rescue motility of a Salmonella ubiquinone-biosynthesis mutant strain. Microbiology 160:1075-86
Sato, Motoaki; Sinha, Prem Kumar; Torres-Bacete, Jesus et al. (2013) Energy transducing roles of antiporter-like subunits in Escherichia coli NDH-1 with main focus on subunit NuoN (ND2). J Biol Chem 288:24705-16
Torres-Bacete, Jesus; Sinha, Prem Kumar; Sato, Motoaki et al. (2012) Roles of subunit NuoK (ND4L) in the energy-transducing mechanism of Escherichia coli NDH-1 (NADH:quinone oxidoreductase). J Biol Chem 287:42763-72
Iwata, Momi; Lee, Yang; Yamashita, Tetsuo et al. (2012) The structure of the yeast NADH dehydrogenase (Ndi1) reveals overlapping binding sites for water- and lipid-soluble substrates. Proc Natl Acad Sci U S A 109:15247-52
Sinha, Prem Kumar; Nakamaru-Ogiso, Eiko; Torres-Bacete, Jesus et al. (2012) Electron transfer in subunit NuoI (TYKY) of Escherichia coli NADH:quinone oxidoreductase (NDH-1). J Biol Chem 287:17363-73
Yang, Yu; Yamashita, Tetsuo; Nakamaru-Ogiso, Eiko et al. (2011) Reaction mechanism of single subunit NADH-ubiquinone oxidoreductase (Ndi1) from Saccharomyces cerevisiae: evidence for a ternary complex mechanism. J Biol Chem 286:9287-97
Torres-Bacete, Jesus; Sinha, Prem Kumar; Matsuno-Yagi, Akemi et al. (2011) Structural contribution of C-terminal segments of NuoL (ND5) and NuoM (ND4) subunits of complex I from Escherichia coli. J Biol Chem 286:34007-14
Murai, Masatoshi; Yamashita, Tetsuo; Senoh, Mai et al. (2010) Characterization of the ubiquinone binding site in the alternative NADH-quinone oxidoreductase of Saccharomyces cerevisiae by photoaffinity labeling. Biochemistry 49:2973-80

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