The DNA-dependent RNA polymerases play a central role in gene expression.
The aim of the proposed research is to contribute to a more precise genetic and biochemical description of the yeast RNA polymerase II. It is proposed that a combination of genetic and biochemical approaches are used in an effort to determine A) whether the polypeptides that copurify with RNA polymerase activity are all genuine subunits, B) whether other subunits exist which have thus far escaped biochemical detection and C) whether different forms of RNA polymerase II are responsible for the transcription of different kinds of genes. To accomplish these goals, the specific aims of the experiments outlined in this proposal are: 1) To identify and isolate the genes which specify each of the yeast RNA polymerase II subunits by probing a recombinant DNA expression library with antibodies and 2) To construct yeast mutants with lesions at defined RNA polymerase gene loci, resulting in conditional phenotypes, by using isolated subunit DNA sequences mutagenized in vitro to replace the wild type gene. The conditional mutants constructed through this procedure will be used in an effort to: A) identify genuine RNA polymerase II subunits through biochemical analysis, B) elucidate RNA polymerase subunit interactions and reveal previously undetected components of the enzyme through the isolation and analysis of extragenic suppressors, C) identify subunits through which specific regulatory factors act to control gene expression, and examine the possibility that there exist multiple forms of RNA polymerase II, by analyzing the effects of the mutant alleles on the relative ability to express specific genes. The health relatedness of this project derives from its contribution to the understanding of the basic molecular mechanisms which control gene expression.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM034365-03
Application #
3285232
Study Section
Genetics Study Section (GEN)
Project Start
1984-12-01
Project End
1988-02-29
Budget Start
1986-12-01
Budget End
1988-02-29
Support Year
3
Fiscal Year
1987
Total Cost
Indirect Cost
Name
Whitehead Institute for Biomedical Research
Department
Type
DUNS #
076580745
City
Cambridge
State
MA
Country
United States
Zip Code
02142
Ng, Huck Hui; Robert, Francois; Young, Richard A et al. (2003) Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity. Mol Cell 11:709-19
Wyrick, J J; Aparicio, J G; Chen, T et al. (2001) Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: high-resolution mapping of replication origins. Science 294:2357-60
Geisberg, J V; Holstege, F C; Young, R A et al. (2001) Yeast NC2 associates with the RNA polymerase II preinitiation complex and selectively affects transcription in vivo. Mol Cell Biol 21:2736-42
Robertson, L S; Causton, H C; Young, R A et al. (2000) The yeast A kinases differentially regulate iron uptake and respiratory function. Proc Natl Acad Sci U S A 97:5984-8
Kimmelman, J; Kaldis, P; Hengartner, C J et al. (1999) Activating phosphorylation of the Kin28p subunit of yeast TFIIH by Cak1p. Mol Cell Biol 19:4774-87
Hengartner, C J; Myer, V E; Liao, S M et al. (1998) Temporal regulation of RNA polymerase II by Srb10 and Kin28 cyclin-dependent kinases. Mol Cell 2:43-53
Woychik, N A; McKune, K; Lane, W S et al. (1993) Yeast RNA polymerase II subunit RPB11 is related to a subunit shared by RNA polymerase I and III. Gene Expr 3:77-82
McKune, K; Richards, K L; Edwards, A M et al. (1993) RPB7, one of two dissociable subunits of yeast RNA polymerase II, is essential for cell viability. Yeast 9:295-9
Choder, M; Young, R A (1993) A portion of RNA polymerase II molecules has a component essential for stress responses and stress survival. Mol Cell Biol 13:6984-91
Woychik, N A; Young, R A (1992) Genes encoding transcription factor IIIA and the RNA polymerase common subunit RPB6 are divergently transcribed in Saccharomyces cerevisiae. Proc Natl Acad Sci U S A 89:3999-4003

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