Many of the genes that control the morphogenesis of the Drosophila embryo are evolutionarily related and share a similar 180 bp protein coding sequence called the homeo box. The homeo box protein domain contains a sequence-specific DNA binding activity, which suggests that homeo box genes might control development by regulating gene expression at the level of transcription. There are at least 30 homeo box genes in Drosophila, of which -20 have been cloned and characterized. Each of these genes shows a unique pattern of expression during early development. and is expressed in a characteristic subset of embryonic cells. Thus, virtually every cell contains a unique combination of active and inactive homeo box genes. It is thought that these different permutations of gene expression play an important role in selecting cell fate and specifying diverse patterns of morphogenesis. Abnormal patterns of homeo box gene expression can result in transformations of cell fate. thereby disrupting the spatial organization of the embryo. The long-range goal of the proposed research is to determine how selective patterns of homeo box gene expression are established during early development and neurogenesis. This study will include: (i) the localization of homeo box gene transcripts in maternal mutants that disrupt the early patterns of gap gene expression: (ii) the use of biochemical assays such as DNA binding and co-transfection of Drosophila tissue culture cells to examine regulatory interactions between the gap gene Kruppel and several pair-rule and homeotic genes: (iii) an evaluation of the in vivo significance of specific DNA sequences that have been shown to bind with high affinity to the homeo box protein even-skipped (eve) in vitro: and, (iv) the identification of """"""""signal"""""""" sequences required for the sub-cellular localization of certain homeo box gene transcripts.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM034431-08
Application #
3285370
Study Section
Molecular Biology Study Section (MBY)
Project Start
1984-12-01
Project End
1993-08-31
Budget Start
1991-09-01
Budget End
1992-08-31
Support Year
8
Fiscal Year
1991
Total Cost
Indirect Cost
Name
University of California San Diego
Department
Type
Schools of Medicine
DUNS #
077758407
City
La Jolla
State
CA
Country
United States
Zip Code
92093
Fukaya, Takashi; Lim, Bomyi; Levine, Michael (2017) Rapid Rates of Pol II Elongation in the Drosophila Embryo. Curr Biol 27:1387-1391
Ferraro, Teresa; Esposito, Emilia; Mancini, Laure et al. (2016) Transcriptional Memory in the Drosophila Embryo. Curr Biol 26:212-218
El-Sherif, Ezzat; Levine, Michael (2016) Shadow Enhancers Mediate Dynamic Shifts of Gap Gene Expression in the Drosophila Embryo. Curr Biol 26:1164-9
Fukaya, Takashi; Lim, Bomyi; Levine, Michael (2016) Enhancer Control of Transcriptional Bursting. Cell 166:358-368
Oktaba, Katarzyna; Zhang, Wei; Lotz, Thea Sabrina et al. (2015) ELAV links paused Pol II to alternative polyadenylation in the Drosophila nervous system. Mol Cell 57:341-8
Hilgers, Valérie (2015) Alternative polyadenylation coupled to transcription initiation: Insights from ELAV-mediated 3' UTR extension. RNA Biol 12:918-21
Bothma, Jacques P; Garcia, Hernan G; Ng, Samuel et al. (2015) Enhancer additivity and non-additivity are determined by enhancer strength in the Drosophila embryo. Elife 4:
Bothma, Jacques P; Garcia, Hernan G; Esposito, Emilia et al. (2014) Dynamic regulation of eve stripe 2 expression reveals transcriptional bursts in living Drosophila embryos. Proc Natl Acad Sci U S A 111:10598-603
Levine, Michael; Cattoglio, Claudia; Tjian, Robert (2014) Looping back to leap forward: transcription enters a new era. Cell 157:13-25
Levine, Michael (2014) The contraction of time and space in remote chromosomal interactions. Cell 158:243-244

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