In this proposal we plan to continue our long-term objectives of elucidating the precise mechanism of DNA fragmentation by metal-drug complexes. Specifically, we will focus on the chemistry of bleomycin-induced DNA degradation. Our recently developed approach to this question involves the synthesis of DNA models which are specifically tritiated at various positions on the deoxyribose ring of a defined nucleotide. Analysis of the fate of the tritium upon degradation of the DNA model by bleomycin, ferrous ion, and oxygen has enabled us to deduce a mechanistic sequence which accounts for the monmeric products formed during the reaction. Our findings are consistent with an initial hydrogen abstraction by bleomycin of the 4'-hydrogen, followed by formation of a 4'-peroxyl or hydroxyl species which lead to base propenal or free base, respectively. The mechanism for free base formation is based on the chemical labilization of the 3'- and 5'-protons in response to a 4'-keto group generated exclusively by this process. During the tenure of this grant, we plan to investigate: 1) the nature of the large selection effect against tritium in the 4'-hydrogen abstraction; 2) the isolation and identification of the carbohydrate moiety formed during free base release; 3) the effects of different metals and reaction conditions on the fragmentation event; 4) the mechanism of O2 incorporation into the products of bleomycin-induced degradation of DNA; and 5) the effects of bleomycin analogs and synthetic """"""""mimics"""""""" on these mechanisms. Our approach provides a unique opportunity to thoroughly study the precise mechanistic sequence of this chemotherapeutically important DNA-drug reaction.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM034454-02
Application #
3285484
Study Section
Physical Biochemistry Study Section (PB)
Project Start
1984-12-01
Project End
1987-11-30
Budget Start
1985-12-01
Budget End
1986-11-30
Support Year
2
Fiscal Year
1986
Total Cost
Indirect Cost
Name
University of Maryland College Park
Department
Type
Earth Sciences/Resources
DUNS #
City
College Park
State
MD
Country
United States
Zip Code
20742
Chen, Jingyang; Ghorai, Manas K; Kenney, Grace et al. (2008) Mechanistic studies on bleomycin-mediated DNA damage: multiple binding modes can result in double-stranded DNA cleavage. Nucleic Acids Res 36:3781-90
Chen, Jingyang; Dupradeau, Francois-Yves; Case, David A et al. (2008) DNA oligonucleotides with A, T, G or C opposite an abasic site: structure and dynamics. Nucleic Acids Res 36:253-62
Chen, Jingyang; Dupradeau, Francois-Yves; Case, David A et al. (2007) Nuclear magnetic resonance structural studies and molecular modeling of duplex DNA containing normal and 4'-oxidized abasic sites. Biochemistry 46:3096-107
Chen, Jingyang; Stubbe, JoAnne (2004) Bleomycins: new methods will allow reinvestigation of old issues. Curr Opin Chem Biol 8:175-81
Chen, Jingyang; Stubbe, JoAnne (2004) Synthesis and characterization of oligonucleotides containing a 4'-keto abasic site. Biochemistry 43:5278-86
Junker, Hans-Dieter; Hoehn, Silvia T; Bunt, Richard C et al. (2002) Synthesis, characterization and solution structure of tethered oligonucleotides containing an internal 3'-phosphoglycolate, 5'-phosphate gapped lesion. Nucleic Acids Res 30:5497-508
Wu, Wei; Vanderwall, Dana E; Turner, Christopher J et al. (2002) Solution structure of the hydroperoxide of Co(III) phleomycin complexed with d(CCAGGCCTGG)2: evidence for binding by partial intercalation. Nucleic Acids Res 30:4881-91
Hoehn, S T; Turner, C J; Stubbe, J (2001) Solution structure of an oligonucleotide containing an abasic site: evidence for an unusual deoxyribose conformation. Nucleic Acids Res 29:3413-23
Hoehn, S T; Junker, H D; Bunt, R C et al. (2001) Solution structure of Co(III)-bleomycin-OOH bound to a phosphoglycolate lesion containing oligonucleotide: implications for bleomycin-induced double-strand DNA cleavage. Biochemistry 40:5894-905
Harsch, A; Marzilli, L A; Bunt, R C et al. (2000) Accurate and rapid modeling of iron-bleomycin-induced DNA damage using tethered duplex oligonucleotides and electrospray ionization ion trap mass spectrometric analysis. Nucleic Acids Res 28:1978-85

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