Our goal is to understand the regulation of gene activity in the yeast Saccharomyces cerevisiae. The studies will focus on the nucleotide sequences which regulate transcription and translation of the histidine biosynthetic enzymes. Mutations in these sequences will be obtained by in vitro and in vovo mutagenesis. The mutations derived in vivo will be cloned by recombinant DNA procedures and then sequenced; those constructed in vitro will be inserted back into the genome for study by transformation. One of the sequences responsible for regulating genes in yeast is the transposable element, TY1. This element causes loss of function by insertion into the 5' non-coding region prior to the first ATG in the gene. We will study the insertion and excision of this element genetically and biochemically. Genetically, we will study the chromosome aberrations caused by the element as well as characterize mutations which enhance or diminish its insertion and excision. We will characterize the join points between the target gene and the element as well as the specificity of the recombination event by nucleotide sequence analysis. The regulatory effort of the insertion element on the transcription capabilities of the adajcent structural gene will be studied by Northern analysis.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM035010-02
Application #
3287064
Study Section
Molecular Biology Study Section (MBY)
Project Start
1984-07-01
Project End
1985-11-30
Budget Start
1984-12-01
Budget End
1985-11-30
Support Year
2
Fiscal Year
1985
Total Cost
Indirect Cost
Name
Whitehead Institute for Biomedical Research
Department
Type
DUNS #
076580745
City
Cambridge
State
MA
Country
United States
Zip Code
Vyas, Valmik K; Bushkin, G Guy; Bernstein, Douglas A et al. (2018) New CRISPR Mutagenesis Strategies Reveal Variation in Repair Mechanisms among Fungi. mSphere 3:
Vyas, Valmik K; Barrasa, M Inmaculada; Fink, Gerald R (2015) A Candida albicans CRISPR system permits genetic engineering of essential genes and gene families. Sci Adv 1:e1500248
Lam, Felix H; Ghaderi, Adel; Fink, Gerald R et al. (2014) Biofuels. Engineering alcohol tolerance in yeast. Science 346:71-5
Schwartz, Schraga; Bernstein, Douglas A; Mumbach, Maxwell R et al. (2014) Transcriptome-wide mapping reveals widespread dynamic-regulated pseudouridylation of ncRNA and mRNA. Cell 159:148-162
Edwards, Matthew D; Symbor-Nagrabska, Anna; Dollard, Lindsey et al. (2014) Interactions between chromosomal and nonchromosomal elements reveal missing heritability. Proc Natl Acad Sci U S A 111:7719-22
Wang, Benjamin L; Ghaderi, Adel; Zhou, Hang et al. (2014) Microfluidic high-throughput culturing of single cells for selection based on extracellular metabolite production or consumption. Nat Biotechnol 32:473-8
Avalos, José L; Fink, Gerald R; Stephanopoulos, Gregory (2013) Compartmentalization of metabolic pathways in yeast mitochondria improves the production of branched-chain alcohols. Nat Biotechnol 31:335-41
Schwartz, Schraga; Agarwala, Sudeep D; Mumbach, Maxwell R et al. (2013) High-resolution mapping reveals a conserved, widespread, dynamic mRNA methylation program in yeast meiosis. Cell 155:1409-21
Agarwala, Sudeep D; Blitzblau, Hannah G; Hochwagen, Andreas et al. (2012) RNA methylation by the MIS complex regulates a cell fate decision in yeast. PLoS Genet 8:e1002732
Bumgarner, Stacie L; Neuert, Gregor; Voight, Benjamin F et al. (2012) Single-cell analysis reveals that noncoding RNAs contribute to clonal heterogeneity by modulating transcription factor recruitment. Mol Cell 45:470-82

Showing the most recent 10 out of 77 publications