A major goal of much biomedical research is to understand how various proteins function. One approach toward this goal is to study the structure of these proteins in the hope that understanding the structures will provide clues about the function. While this has been a valuable approach, we note that protein structures change as the proteins carry out their function so that methods which can measure the dynamics of structural changes in biologically important molecules are very important. We have developed a technique which allows us to measure circular dichroism spectra, which are sensitive to macromolecular structure, with nanosecond time resolution. In this proposal we seek to renew funding for this project in order to extend the method to provide improved time-resolution in the far ultraviolet spectral region (an important spectral region for determining structures) and to apply the method to study a variety of biomedically important problems. These include studies of the function of heme proteins such as myoglobin and hemoglobin, studies of the function of phytochrome, a plant regulatory protein, studies of electron transfer processes in proteins, studies of proteins affecting muscle contractions, and studies of protein folding processes in both model peptide systems and natural proteins.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM035158-12
Application #
2177778
Study Section
Molecular and Cellular Biophysics Study Section (BBCA)
Project Start
1985-08-30
Project End
1999-01-31
Budget Start
1996-08-01
Budget End
1999-01-31
Support Year
12
Fiscal Year
1996
Total Cost
Indirect Cost
Name
University of California Santa Cruz
Department
Chemistry
Type
Schools of Arts and Sciences
DUNS #
City
Santa Cruz
State
CA
Country
United States
Zip Code
95064
Goldbeck, R A; Thomas, Y G; Chen, E et al. (1999) Multiple pathways on a protein-folding energy landscape: kinetic evidence. Proc Natl Acad Sci U S A 96:2782-7
Chen, E; Wood, M J; Fink, A L et al. (1998) Time-resolved circular dichroism studies of protein folding intermediates of cytochrome c. Biochemistry 37:5589-98
Chen, E; Goldbeck, R A; Kliger, D S (1997) Nanosecond time-resolved spectroscopy of biomolecular processes. Annu Rev Biophys Biomol Struct 26:327-55
Goldbeck, R A; Kim-Shapiro, D B; Kliger, D S (1997) Fast natural and magnetic circular dichroism spectroscopy. Annu Rev Phys Chem 48:453-79
Chen, E; Lapko, V N; Song, P S et al. (1997) Dynamics of the N-terminal alpha-helix unfolding in the photoreversion reaction of phytochrome A. Biochemistry 36:4903-8
Goldbeck, R A; Sagle, L; Kim-Shapiro, D B et al. (1997) Evidence for heme-heme excitonic coupling in the Soret circular dichroism of hemoglobin. Biochem Biophys Res Commun 235:610-4
Chen, E; Lapko, V N; Lewis, J W et al. (1996) Mechanism of native oat phytochrome photoreversion: a time-resolved absorption investigation. Biochemistry 35:843-50
Bjorling, S C; Goldbeck, R A; Paquette, S J et al. (1996) Allosteric intermediates in hemoglobin. 1. Nanosecond time-resolved circular dichroism spectroscopy. Biochemistry 35:8619-27
Goldbeck, R A; Paquette, S J; Bjorling, S C et al. (1996) Allosteric intermediates in hemoglobin. 2. Kinetic modeling of HbCO photolysis. Biochemistry 35:8628-39
Shapiro, D B; Esquerra, R M; Goldbeck, R A et al. (1996) A study of the mechanisms of slow religation to sickle cell hemoglobin polymers following laser photolysis. J Mol Biol 259:947-56

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