This supplemental proposal outlines progress toward the high resolution crystal structures of two unusual electron transport proteins from Azotobacter vinelandii, a nitrogen fixing, aerobic bacterium. Ferredoxin 1 (Fd1) crystallizes in two forms: tetragonal with one molecule per asymmetric unit (Z equals 1) and triclinic (Z equals 4). The tetragonal form is a new crystal form not previously described which diffracts X-rays to 2.0 A resolution. Triclinic crystals diffract to 2.5 A. Cytochrome c5 crystallizes in two forms: triclinic with Z equals 2 (1.7 A resolution) and monoclinic with Z equals 1 (2.0 A resolution). Both tetragonal Fd1 and triclinic c5 crystals are ideally suited for diffractometer data collection. The initial objective is to obtain 3-4 A resolution structures of each protein. Azotobacter Fd 1 is the first well characterized member of a new class of iron-sulfur proteins, not like other bacterial ferredoxins. Its two (Fe4S4S4cys) clusters differ by over 0.7 v in reduction potential. One cluster has novel EPR and redox properties analogous to one of the centers in nitrogenase. Unlike other cytochromes c, c5 forms a stable dimer. As one of two abundant diheme cytochromes in Azotobacter, c5 transfers electrons from cytochrome b1 to cytochrome O.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
7R01GM036325-01
Application #
3290062
Study Section
Biophysics and Biophysical Chemistry B Study Section (BBCB)
Project Start
1985-08-01
Project End
1986-07-31
Budget Start
1985-08-01
Budget End
1986-07-31
Support Year
1
Fiscal Year
1985
Total Cost
Indirect Cost
Name
Scripps Research Institute
Department
Type
DUNS #
City
San Diego
State
CA
Country
United States
Zip Code
92037
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Sridhar Prasad, G; Kresge, N; Muhlberg, A B et al. (1998) The crystal structure of NADPH:ferredoxin reductase from Azotobacter vinelandii. Protein Sci 7:2541-9
Stout, C D; Stura, E A; McRee, D E (1998) Structure of Azotobacter vinelandii 7Fe ferredoxin at 1.35 A resolution and determination of the [Fe-S] bonds with 0.01 A accuracy. J Mol Biol 278:629-39
Kemper, M A; Stout, C D; Lloyd, S J et al. (1997) Y13C Azotobacter vinelandii ferredoxin I. A designed [Fe-S] ligand motif contains a cysteine persulfide. J Biol Chem 272:15620-7
Lauble, H; Kennedy, M C; Emptage, M H et al. (1996) The reaction of fluorocitrate with aconitase and the crystal structure of the enzyme-inhibitor complex. Proc Natl Acad Sci U S A 93:13699-703
Lauble, H; Stout, C D (1995) Steric and conformational features of the aconitase mechanism. Proteins 22:1-11

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