A serious limitation of the x-ray crystallographic approach to an understanding of macromolecular function has been its inability to reveal changes in structure on a biochemical time scale. Conventional crystallographic studies have revealed essentially static structures, a space average over all molecules in the crystal and a time average over the hours or tens of hours required for data collection. Thus, the structures of functionally crucial, transient intermediates in ligand binding, catalysis and conformational change have had to be inferred from a series of static structures, presumed to be similar to the crystallographically inaccessible intermediates. Accurate inferences have been hard to draw; mechanism is less readily understood than structure. The availability of very intense, polychromatic synchrotron x-ray sources such as CHESS and recent advances in x-ray optics have greatly diminished the time necessary to record an x-ray diffraction pattern from a macromolecular crystal. This time stands at well under one second on film now, with the immediate prospect of a further reduction to roughly 25 msec with focussing optics. We propose to apply our polychromatic, Laue diffraction technique to the development of time-resolved macromolecular crystallography. That is, we will initiate a structural reaction in the crystal, monitor the time-dependent changes in structure factors, and analyze the results in terms of time-dependent structures. Systems to be developed include the thermal unfolding of ribonuclease A, hen egg white and phage T4 lysozymes in response to a rapid temperature jump, at temperatures below and approaching the melting temperature; denaturant-induced unfolding, where a concentration jump is applied in a flow cell; the flash photolysis of carboxymyoglobin; and the synthesis and development of """"""""caged"""""""" substrates, effectors and chelators, modelled on """"""""caged ATP"""""""", and their application to enzymes where a phosphate group is in some way involved, and to calcium binding proteins.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM036452-02
Application #
3290451
Study Section
Biophysics and Biophysical Chemistry A Study Section (BBCA)
Project Start
1986-08-01
Project End
1989-07-31
Budget Start
1987-08-01
Budget End
1988-07-31
Support Year
2
Fiscal Year
1987
Total Cost
Indirect Cost
Name
Cornell University
Department
Type
Schools of Arts and Sciences
DUNS #
City
Ithaca
State
NY
Country
United States
Zip Code
14850
Yang, Xiaojing; Stojkovi?, Emina A; Ozarowski, Wesley B et al. (2015) Light Signaling Mechanism of Two Tandem Bacteriophytochromes. Structure 23:1179-89
Moffat, Keith (2014) Time-resolved crystallography and protein design: signalling photoreceptors and optogenetics. Philos Trans R Soc Lond B Biol Sci 369:20130568
Stojkovi?, Emina A; Toh, K C; Alexandre, Maxime T A et al. (2014) FTIR Spectroscopy Revealing Light-Dependent Refolding of the Conserved Tongue Region of Bacteriophytochrome. J Phys Chem Lett 5:2512-2515
Jung, Yang Ouk; Lee, Jae Hyuk; Kim, Joonghan et al. (2013) Volume-conserving trans-cis isomerization pathways in photoactive yellow protein visualized by picosecond X-ray crystallography. Nat Chem 5:212-20
Nieder, Jana B; Stojkovi?, Emina A; Moffat, Keith et al. (2013) Pigment-protein interactions in phytochromes probed by fluorescence line narrowing spectroscopy. J Phys Chem B 117:14940-50
Halavaty, Andrei S; Moffat, Keith (2013) Coiled-coil dimerization of the LOV2 domain of the blue-light photoreceptor phototropin 1 from Arabidopsis thaliana. Acta Crystallogr Sect F Struct Biol Cryst Commun 69:1316-21
Sugishima, Masakazu; Moffat, Keith; Noguchi, Masato (2012) Discrimination between CO and O(2) in heme oxygenase: comparison of static structures and dynamic conformation changes following CO photolysis. Biochemistry 51:8554-62
Ohlendorf, Robert; Vidavski, Roee R; Eldar, Avigdor et al. (2012) From dusk till dawn: one-plasmid systems for light-regulated gene expression. J Mol Biol 416:534-42
Mitra, Devrani; Yang, Xiaojing; Moffat, Keith (2012) Crystal structures of Aureochrome1 LOV suggest new design strategies for optogenetics. Structure 20:698-706
Neutze, Richard; Moffat, Keith (2012) Time-resolved structural studies at synchrotrons and X-ray free electron lasers: opportunities and challenges. Curr Opin Struct Biol 22:651-9

Showing the most recent 10 out of 61 publications