The long-term goal of this work is to understand, in precise molecular term , how the yeast transcriptional repressor alpha 2 turns off transcription of two set of cell-type specific genes. This protein always acts in combinati n with one of two additional proteins. In alpha cells it cooperates with the GRM protein; in a/alpha cells, it acts with the al protein. These accessor proteins director alpha 2 to two different types of operator and thus enabl alpha 2 to turn off expression of two different sets of genes. Three specif c questions addressed by the proposal are as follows: (1) How do these regulatory proteins act together? (2) How do they reshuffle to create different regulatory activities? (3) How, once bound to its operators, doe alpha 2 carry out repression of its target genes. The basic approach is to use results of simple biochemical and genetic experiments to construct and test molecular models. ONe immediate experimental goal, for example, is a reconstruction and study of the different pairwise combinations of regulators using only purified proteins. A second experimental approach is a reconstruction of transcriptional repression by alpha 2 in vitro and a determination of the step in transcription that is blocked by the action of alpha 2. The proposed studies of alpha 2 should provide a detailed molecular picture showing how cell specialization is maintained in a simple eukaryote, S. cerevisiae. Given the similarity of alpha 2 to cell-type regulators in higher organisms, it is likely that many of the principles developed for alpha 2 will apply in other settings. A basic understanding of the molecul r events underlying cell specialization is essential for understanding how th process can fail, a condition that can give rise to a number of different pathological states.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM037049-07
Application #
3291953
Study Section
Molecular Biology Study Section (MBY)
Project Start
1986-08-01
Project End
1994-07-31
Budget Start
1992-08-01
Budget End
1993-07-31
Support Year
7
Fiscal Year
1992
Total Cost
Indirect Cost
Name
University of California San Francisco
Department
Type
Schools of Medicine
DUNS #
073133571
City
San Francisco
State
CA
Country
United States
Zip Code
94143
Sorrells, Trevor R; Johnson, Amanda N; Howard, Conor J et al. (2018) Intrinsic cooperativity potentiates parallel cis-regulatory evolution. Elife 7:
Johnson, Alexander D (2017) The rewiring of transcription circuits in evolution. Curr Opin Genet Dev 47:121-127
Dalal, Chiraj K; Johnson, Alexander D (2017) How transcription circuits explore alternative architectures while maintaining overall circuit output. Genes Dev 31:1397-1405
Nocedal, Isabel; Mancera, Eugenio; Johnson, Alexander D (2017) Gene regulatory network plasticity predates a switch in function of a conserved transcription regulator. Elife 6:
Hanson-Smith, Victor; Johnson, Alexander (2016) PhyloBot: A Web Portal for Automated Phylogenetics, Ancestral Sequence Reconstruction, and Exploration of Mutational Trajectories. PLoS Comput Biol 12:e1004976
Sorrells, Trevor R; Johnson, Alexander D (2015) Making sense of transcription networks. Cell 161:714-23
Sorrells, Trevor R; Booth, Lauren N; Tuch, Brian B et al. (2015) Intersecting transcription networks constrain gene regulatory evolution. Nature 523:361-5
Nocedal, Isabel; Johnson, Alexander D (2015) How Transcription Networks Evolve and Produce Biological Novelty. Cold Spring Harb Symp Quant Biol 80:265-74
Howard, Conor J; Hanson-Smith, Victor; Kennedy, Kristopher J et al. (2014) Ancestral resurrection reveals evolutionary mechanisms of kinase plasticity. Elife 3:
Baker, Christopher R; Hanson-Smith, Victor; Johnson, Alexander D (2013) Following gene duplication, paralog interference constrains transcriptional circuit evolution. Science 342:104-8

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