The long-range goal of this project is to characterize the manner in which the RNA polymerases of bacteriophages T3 and T7 interact with transcription signals in the DNA template and perform their catalytic functions. Because of their structural simplicity and high degree of specificity, the phage polymerases are uniquely well suited for studies at the molecular level. Each of the phage enzymes consists of a single species of protein of ca 100 kd. Furthermore, the genes that encode the polymerases have been cloned and expressed in bacteria, making possible a variety of methods to analyze their structure and function. The specific goals are as follows: 1) Characterize the important structural features of the T3 and T7 promoters. The T3 and T7 promoters are both related to a highly conserved 23 bp consensus sequence. By examining the properties of synthetic mutant promoters, the elements of promoter structure that are required for binding and initiation will be examined. Similarly, the effects of methylating and ethylating promoters prior to polymerase binding will reveal important contacts between he enzyme and the DNA. 2) Identify functional domains within the enzyme. The T3 and T7 enzymes are highly specific for their own promoters. By constructing hybrid T3/T7 polymerase genes in vitro an 80 aa region of the polymerase that is responsible for specific promoter recognition has been identified. Site directed mutagenesis of the cloned polymerase genes will be used to characterize this region. In a parallel approach, the T3 and T7 RNA polymerase genes have been placed in plasmid and bacteriophage lambda vectors that allow the selection and characterization of polymerase mutants that are altered in transcription specificity, termination efficiency, and ability to participate in non-transcription activities such as replication and packaging of phage DNA. The active site of the polymerase may be specifically labelled through the use of reactive ribonucleotide derivatives; biochemical and genetic methods will be used to localize and characterize this region of the polymerase. Because all RNA polymerases carry out essentially the same series of steps in their reaction pathways, the information that we gain from these studies will serve to guide future experiments in more complex systems.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM038147-04
Application #
3294233
Study Section
Microbial Physiology and Genetics Subcommittee 2 (MBC)
Project Start
1986-07-01
Project End
1993-06-30
Budget Start
1990-07-01
Budget End
1991-06-30
Support Year
4
Fiscal Year
1990
Total Cost
Indirect Cost
Name
Suny Downstate Medical Center
Department
Type
Schools of Medicine
DUNS #
068552207
City
Brooklyn
State
NY
Country
United States
Zip Code
11203
Molodtsov, Vadim; Anikin, Michael; McAllister, William T (2014) The presence of an RNA:DNA hybrid that is prone to slippage promotes termination by T7 RNA polymerase. J Mol Biol 426:3095-3107
Winnike, J H; Li, Z; Wright, F A et al. (2010) Use of pharmaco-metabonomics for early prediction of acetaminophen-induced hepatotoxicity in humans. Clin Pharmacol Ther 88:45-51
Litonin, Dmitry; Sologub, Marina; Shi, Yonghong et al. (2010) Human mitochondrial transcription revisited: only TFAM and TFB2M are required for transcription of the mitochondrial genes in vitro. J Biol Chem 285:18129-33
O'Connell, T M; Watkins, P B (2010) The application of metabonomics to predict drug-induced liver injury. Clin Pharmacol Ther 88:394-9
Savkina, Maria; Temiakov, Dmitry; McAllister, William T et al. (2010) Multiple functions of yeast mitochondrial transcription factor Mtf1p during initiation. J Biol Chem 285:3957-64
Sologub, Marina; Litonin, Dmitry; Anikin, Michael et al. (2009) TFB2 is a transient component of the catalytic site of the human mitochondrial RNA polymerase. Cell 139:934-44
Winnike, Jason H; Busby, Marjorie G; Watkins, Paul B et al. (2009) Effects of a prolonged standardized diet on normalizing the human metabolome. Am J Clin Nutr 90:1496-501
Kent, Tatyana; Kashkina, Ekaterina; Anikin, Michael et al. (2009) Maintenance of RNA-DNA hybrid length in bacterial RNA polymerases. J Biol Chem 284:13497-504
Markov, Dmitriy A; Savkina, Maria; Anikin, Michael et al. (2009) Identification of proteins associated with the yeast mitochondrial RNA polymerase by tandem affinity purification. Yeast 26:423-40
Ma, Na; McAllister, William T (2009) In a head-on collision, two RNA polymerases approaching one another on the same DNA may pass by one another. J Mol Biol 391:808-12

Showing the most recent 10 out of 62 publications