The metalloenzyme Cu,Zn superoxide dismutase (SOD) is a master eukaryotic regulator of reactive oxygen species within cells by dismutating superoxide anions into peroxide and oxygen. Biochemically, SOD is remarkable for its unusually great subunit and dimer stability, faster than diffusion enzyme-substrate recognition coupled to exquisite specificity, and efficient catalysis requiring alternate superoxide oxidation and reduction. Biologically, SOD is important for decreasing aging and increasing lifespan by reducing oxidative stress from inflammation and injury. Medically, human SOD or HSOD is notable for the recently proven role of SOD mutations in causing the fatal degenerative disease of motor neurons termed amyotrophic lateral sclerosis (ALS) or Lou Gherig's disease. Our structures of human, bovine, yeast, and Photobacter SODs provide a basis for the proposed studies that focus on the structural metallobiochemistry of ALS HSOD mutants. High resolution structure determinations of HSOD mutants will be integrated with coupled computational, mutational, and biochemical analyses including assays of stability, assembly, metal binding, and catalytic activity. Due to the uncertainties in mutant design and crystallization, a pyramid strategy is proposed starting with the large base of SOD ALS mutants plus mutants designed to probe HSOD folding, stability, assembly, and activity. After expression and preliminary characterization, the focus will be on mutants that prove most informative biochemically, and then to the subset of key mutants that provide crystals suitable for high resolution HSOD structures. Biochemical and biological results on our mutant SODs obtained by our collaborators will complement research on HSOD structural metallobiochemistry at Scripps. The molecular basis for possible toxic properties of ALS SOD mutants including peroxidation and nitration activities will be defined in terms of active site architecture. The combination of ALS variants with other designed mutants (altered in HSOD folding, stability, assembly, metal binding, substrate recognition, specificity, active channel architecture, or catalysis) will provide enzymes to be used in transgenic mice and Drosophila systems to test hypotheses regarding the molecular basis for ALS. HSOD mutations that alter HSOD assembly, cell surface binding, and half-life will provide protein lead compounds for possible eventual therapeutics. Overall, the proposed research will improve fundamental understanding of SOD metallobiochemistry, structure, and function at the atomic level and contribute to understanding how HSOD variants can cause ALS.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
2R01GM039345-10A1
Application #
2620856
Study Section
Metallobiochemistry Study Section (BMT)
Project Start
1988-09-20
Project End
2002-03-31
Budget Start
1998-04-01
Budget End
1999-03-31
Support Year
10
Fiscal Year
1998
Total Cost
Indirect Cost
Name
Scripps Research Institute
Department
Type
DUNS #
City
La Jolla
State
CA
Country
United States
Zip Code
92037
Pratt, Ashley J; DiDonato, Michael; Shin, David S et al. (2015) Structural, Functional, and Immunogenic Insights on Cu,Zn Superoxide Dismutase Pathogenic Virulence Factors from Neisseria meningitidis and Brucella abortus. J Bacteriol 197:3834-47
Merz, Gregory E; Borbat, Peter P; Pratt, Ashley J et al. (2014) Copper-based pulsed dipolar ESR spectroscopy as a probe of protein conformation linked to disease states. Biophys J 107:1669-74
Pratt, Ashley J; Shin, David S; Merz, Gregory E et al. (2014) Aggregation propensities of superoxide dismutase G93 hotspot mutants mirror ALS clinical phenotypes. Proc Natl Acad Sci U S A 111:E4568-76
Seeger, Franziska; Quintyn, Royston; Tanimoto, Akiko et al. (2014) Interfacial residues promote an optimal alignment of the catalytic center in human soluble guanylate cyclase: heterodimerization is required but not sufficient for activity. Biochemistry 53:2153-65
Perry, J Jefferson P; Tainer, John A (2013) Developing advanced X-ray scattering methods combined with crystallography and computation. Methods 59:363-71
Pratt, Ashley J; Getzoff, Elizabeth D; Perry, J Jefferson P (2012) Amyotrophic lateral sclerosis: update and new developments. Degener Neurol Neuromuscul Dis 2012:1-14
Perry, J J P; Shin, D S; Getzoff, E D et al. (2010) The structural biochemistry of the superoxide dismutases. Biochim Biophys Acta 1804:245-62
Perry, J Jefferson P; Shin, David S; Tainer, John A (2010) Amyotrophic lateral sclerosis. Adv Exp Med Biol 685:9-20
Shin, David S; Didonato, Michael; Barondeau, David P et al. (2009) Superoxide dismutase from the eukaryotic thermophile Alvinella pompejana: structures, stability, mechanism, and insights into amyotrophic lateral sclerosis. J Mol Biol 385:1534-55
Roberts, Blaine R; Tainer, John A; Getzoff, Elizabeth D et al. (2007) Structural characterization of zinc-deficient human superoxide dismutase and implications for ALS. J Mol Biol 373:877-90

Showing the most recent 10 out of 37 publications