The well-studied biology of the T-even phages and their host,Escherichia coli, provides us with a unique opportunity for molecular analysis of newly-discovered self-splicing RNAs, by genetic dissection as well as comparative study. The goals of the proposed project include a fundamental structure-function analysis of self-splicing RNAs, as well as study of the generality and distribution of naturally occurring introns in this eubacterial system. Thse investigations will be greatly facilitated by powerful prokaryotic genetic strategies and by the availability of useful phage mutants and plasmid constructs. In addition to the intron in the thymidylate synthase (td) gene, two other group I introns were recently reported in T4 (Gott, J.M., Shub, D.A. and Belfort, M. Cell (1986) 47.81). One of these is within the nrdB gene encoding ribonucleoside diphosphate reductase subunit B, while the other is at an uncharacterized locus in the nrdC-gene 55 region of the T4 map. These two new introns are therefore available for analysis and comparison with one another,with the td intron, with eukaryotic group I introns and with other prokaryotic introns that may emerge from proposed studies. Primary sequence, secondary structure, the in vivo and in vitro splicing reactions and the key elements of the splicing process as determined by mutational analysis will be compared. Consensus structural elements and functional conservation on one hand, and the nature, distribution and phenotypes of splicing- defective mutations and second-site revertants on the other, will delineate critical structural and functional components of the group I splicing pathway. In addressing the generality of introns in this prokaryotic system we shall explore the existence of group I introns in E. coli and probe the occurrence of factor-dependent group I introns and of group II introns in T4. Further, the phages T2 and T6 provide a favorable system for comparison of the structure and distribution of introns in closely related organisms. Interest in this aspect of the work is heightened by our recent observations that indicate the variable occurrence of the different introns in the T-even phages, and that therefore suggest intron mobility. The overall study will thus address issues of generality, distribution, evolutionary history and possible mobility of introns as well as analyze the basic self-splicing process, in this genetically defined and manipulable prokaryotic model system.
| Dong, Xiaolong; Ranganathan, Srivathsan; Qu, Guosheng et al. (2018) Structural accommodations accompanying splicing of a group II intron RNP. Nucleic Acids Res 46:8542-8556 |
| Pearson, C Seth; Nemati, Reza; Liu, Binbin et al. (2018) Structure of an Engineered Intein Reveals Thiazoline Ring and Provides Mechanistic Insight. Biotechnol Bioeng : |
| Qu, Guosheng; Piazza, Carol Lyn; Smith, Dorie et al. (2018) Group II intron inhibits conjugative relaxase expression in bacteria by mRNA targeting. Elife 7: |
| Lennon, Christopher W; Stanger, Matthew; Banavali, Nilesh K et al. (2018) Conditional Protein Splicing Switch in Hyperthermophiles through an Intein-Extein Partnership. MBio 9: |
| Kelley, Danielle S; Lennon, Christopher W; Li, Zhong et al. (2018) Mycobacterial DnaB helicase intein as oxidative stress sensor. Nat Commun 9:4363 |
| Green, Cathleen M; Novikova, Olga; Belfort, Marlene (2018) The dynamic intein landscape of eukaryotes. Mob DNA 9:4 |
| Belfort, Marlene (2017) Mobile self-splicing introns and inteins as environmental sensors. Curr Opin Microbiol 38:51-58 |
| Lennon, Christopher W; Belfort, Marlene (2017) Inteins. Curr Biol 27:R204-R206 |
| Novikova, Olga; Belfort, Marlene (2017) Mobile Group II Introns as Ancestral Eukaryotic Elements. Trends Genet 33:773-783 |
| Agrawal, Rajendra Kumar; Wang, Hong-Wei; Belfort, Marlene (2016) Forks in the tracks: Group II introns, spliceosomes, telomeres and beyond. RNA Biol 13:1218-1222 |
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