Iron-sulfur clusters and related species form the active sites of an important class of metalloenzymes that participate in electron transfer and catalysis in a wide variety of organisms. This project involves the use of novel techniques in quantum chemistry to study electronic structure problems in this active sites. The principal goal is to understand the nature of spin-coupling in these systems, and to explore how these couplings influence their oxidation-reduction and catalytic properties. This will be accomplished though systematic studies of various active site models in calculations of Heisenberg and resonance exchange parameters, Mossbauer and electron spin resonance parameters (including g and hyperfine tensors), electric fields and charge densities, and analysis of bond energies and their variation with cluster structure. All of the quantum calculations will use local density functional models expanded in large basis sets of atomic orbitals. Systems to be studied include: (1) 4Fe-4S and 4Fe-4Se clusters in the +1 and +3 oxidation states (a continuation of current efforts); (2) intermediates in the catalytic cycle of aconitase; (3) mixed-metal clusters with XFe3 stoichiometry, where X is Mo or Ni; (4) models for the active sites 3 of Rieske proteins. In addition, we plan to extend our current models to handle spin-orbit couplings (and hence zero-field splittings), to prepare new graphical representations of charge and spin densities, and to explore new models for electron transfer events in which ligand spin polarization is a mediating influence. As a whole, this study should provide valuable information about the spectroscopy and chemistry of iron sulfur and related clusters. We have established close collaborations with a variety of experimental groups to help ensure that the models we build are of real relevance to current problems in bioinorganic chemistry.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM039914-06
Application #
3297190
Study Section
Metallobiochemistry Study Section (BMT)
Project Start
1988-04-01
Project End
1995-03-31
Budget Start
1993-04-01
Budget End
1994-03-31
Support Year
6
Fiscal Year
1993
Total Cost
Indirect Cost
Name
Scripps Research Institute
Department
Type
DUNS #
City
La Jolla
State
CA
Country
United States
Zip Code
92037
Janowski, Pawel A; Liu, Chunmei; Deckman, Jason et al. (2016) Molecular dynamics simulation of triclinic lysozyme in a crystal lattice. Protein Sci 25:87-102
Mitra, Devrani; George, Simon J; Guo, Yisong et al. (2013) Characterization of [4Fe-4S] cluster vibrations and structure in nitrogenase Fe protein at three oxidation levels via combined NRVS, EXAFS, and DFT analyses. J Am Chem Soc 135:2530-43
Sandala, Gregory M; Noodleman, Louis (2011) Modeling the MoFe nitrogenase system with broken symmetry density functional theory. Methods Mol Biol 766:293-312
Mitra, Devrani; Pelmenschikov, Vladimir; Guo, Yisong et al. (2011) Dynamics of the [4Fe-4S] cluster in Pyrococcus furiosus D14C ferredoxin via nuclear resonance vibrational and resonance Raman spectroscopies, force field simulations, and density functional theory calculations. Biochemistry 50:5220-35
Pelmenschikov, Vladimir; Guo, Yisong; Wang, Hongxin et al. (2011) Fe-H/D stretching and bending modes in nuclear resonant vibrational, Raman and infrared spectroscopies: comparisons of density functional theory and experiment. Faraday Discuss 148:409-20; discussion 421-41
Sandala, Gregory M; Hopmann, Kathrin H; Ghosh, Abhik et al. (2011) Calibration of DFT Functionals for the Prediction of Fe Mössbauer Spectral Parameters in Iron-Nitrosyl and Iron-Sulfur Complexes: Accurate Geometries Prove Essential. J Chem Theory Comput 7:3232-3247
Bhave, Devayani P; Han, Wen-Ge; Pazicni, Samuel et al. (2011) Geometric and electrostatic study of the [4Fe-4S] cluster of adenosine-5'-phosphosulfate reductase from broken symmetry density functional calculations and extended X-ray absorption fine structure spectroscopy. Inorg Chem 50:6610-25
Hopmann, Kathrin H; Noodleman, Louis; Ghosh, Abhik (2010) Spin coupling in Roussin's red and black salts. Chemistry 16:10397-408
Hopmann, Kathrin H; Ghosh, Abhik; Noodleman, Louis (2009) Density functional theory calculations on Mössbauer parameters of nonheme iron nitrosyls. Inorg Chem 48:9155-65
Guo, Yisong; Wang, Hongxin; Xiao, Yuming et al. (2008) Characterization of the Fe site in iron-sulfur cluster-free hydrogenase (Hmd) and of a model compound via nuclear resonance vibrational spectroscopy (NRVS). Inorg Chem 47:3969-77

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