The 70 kilodalton heat-shock-related proteins (""""""""stress-70"""""""" proteins) comprise a pervasive family of molecular chaperones that are essential for the viability of living cells. Members of this protein family have been implicated in protein folding, transmembrane protein targeting, renaturation of denatured proteins, disassembly of specific supramolecular complexes such as clathrin, antigen presentation, and targeting of polypeptides for lysosomal proteolysis. The long-range goal of this work is to understand the structure and mechanism of stress-70 proteins in vitro.; this is a necessary prerequisite for understanding their in vivo biological activities. In the most simplistic view, these proteins are ATPases that bind and release """"""""unstructured"""""""" polypeptides. They have a peptide binding activity, an ATPase activity, and a mechanism of coupling the ATPase cycle to peptide binding/release, presumably through a conformational change. Kinetics, mutagenesis and x-ray crystallography have been used to determine the ATPase mechanism. Small-angle x-ray scattering and fluorescence have been applied to the study of the magnitude and kinetics of the ATP-induced conformational change. Future efforts will focus on: 1. Mutants that should pre-empt the essential K+ ions in the nucleotide binding site will be constructed and characterized, to complete the studies of the ATPase mechanism. 2. The biochemical mechanism that couple the ATPase cycle with conformational change and peptide binding/release will be determined by measuring and correlating the kinetics of peptide binding and release with the kinetics of the conformational change and the individual steps of the ATPase reaction. 3. The amino acid preference of stress-70 proteins in peptide binding will be determined by measuring both equilibrium binding constants and kinetic """"""""on"""""""" and """"""""off"""""""" rates for tight-binding peptides, and then varying the type of amino acid at each site (-> Lys, Glu, Gly, Leu, Phe, Asn) and determining how different site-specific changes affect binding affinity. 4. Efforts will be made to crystallize full-length Hsc70 and its peptide binding domain.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM039928-12
Application #
2734595
Study Section
Biophysical Chemistry Study Section (BBCB)
Project Start
1988-10-01
Project End
1999-12-09
Budget Start
1998-07-01
Budget End
1999-12-09
Support Year
12
Fiscal Year
1998
Total Cost
Indirect Cost
Name
Stanford University
Department
Anatomy/Cell Biology
Type
Schools of Medicine
DUNS #
800771545
City
Stanford
State
CA
Country
United States
Zip Code
94305
Xu, Xiaohua; Wang, Shuying; Hu, Yao-Xiong et al. (2007) The periplasmic bacterial molecular chaperone SurA adapts its structure to bind peptides in different conformations to assert a sequence preference for aromatic residues. J Mol Biol 373:367-81
Bitto, Eduard; McKay, David B (2004) Binding of phage-display-selected peptides to the periplasmic chaperone protein SurA mimics binding of unfolded outer membrane proteins. FEBS Lett 568:94-8
Kwon, Ae-Ran; Trame, Christine B; McKay, David B (2004) Kinetics of protein substrate degradation by HslUV. J Struct Biol 146:141-7
Trame, Christine B; McKay, David B (2003) Structure of the Yersinia enterocolitica molecular-chaperone protein SycE. Acta Crystallogr D Biol Crystallogr 59:389-92
Kwon, Ae-Ran; Kessler, Benedikt M; Overkleeft, Herman S et al. (2003) Structure and reactivity of an asymmetric complex between HslV and I-domain deleted HslU, a prokaryotic homolog of the eukaryotic proteasome. J Mol Biol 330:185-95
Bitto, Eduard; McKay, David B (2003) The periplasmic molecular chaperone protein SurA binds a peptide motif that is characteristic of integral outer membrane proteins. J Biol Chem 278:49316-22
Bitto, Eduard; McKay, David B (2002) Crystallographic structure of SurA, a molecular chaperone that facilitates folding of outer membrane porins. Structure 10:1489-98
Sousa, Marcelo C; Kessler, Benedikt M; Overkleeft, Herman S et al. (2002) Crystal structure of HslUV complexed with a vinyl sulfone inhibitor: corroboration of a proposed mechanism of allosteric activation of HslV by HslU. J Mol Biol 318:779-85
Wedekind, J E; Trame, C B; Dorywalska, M et al. (2001) Refined crystallographic structure of Pseudomonas aeruginosa exotoxin A and its implications for the molecular mechanism of toxicity. J Mol Biol 314:823-37
Sousa, M C; McKay, D B (2001) Structure of Haemophilus influenzae HslV protein at 1.9 A resolution, revealing a cation-binding site near the catalytic site. Acta Crystallogr D Biol Crystallogr 57:1950-4

Showing the most recent 10 out of 34 publications