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Sim, Adelene Y L; Minary, Peter; Levitt, Michael (2012) Modeling nucleic acids. Curr Opin Struct Biol 22:273-8
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Moreno-Hernández, Sergio; Levitt, Michael (2012) Comparative modeling and protein-like features of hydrophobic-polar models on a two-dimensional lattice. Proteins 80:1683-93
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Sim, Adelene Y L; Levitt, Michael; Minary, Peter (2012) Modeling and design by hierarchical natural moves. Proc Natl Acad Sci U S A 109:2890-5
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Sim, Adelene Y L; Levitt, Michael (2011) Clustering to identify RNA conformations constrained by secondary structure. Proc Natl Acad Sci U S A 108:3590-5
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Bernauer, Julie; Huang, Xuhui; Sim, Adelene Y L et al. (2011) Fully differentiable coarse-grained and all-atom knowledge-based potentials for RNA structure evaluation. RNA 17:1066-75
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Samson, Abraham O; Levitt, Michael (2011) Normal modes of prion proteins: from native to infectious particle. Biochemistry 50:2243-8
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Bray, Jenelle K; Weiss, Dahlia R; Levitt, Michael (2011) Optimized torsion-angle normal modes reproduce conformational changes more accurately than cartesian modes. Biophys J 101:2966-9
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Chopra, Gaurav; Levitt, Michael (2011) Remarkable patterns of surface water ordering around polarized buckminsterfullerene. Proc Natl Acad Sci U S A 108:14455-60
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Huang, Xuhui; Wang, Dong; Weiss, Dahlia R et al. (2010) RNA polymerase II trigger loop residues stabilize and position the incoming nucleotide triphosphate in transcription. Proc Natl Acad Sci U S A 107:15745-50
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Minary, Peter; Levitt, Michael (2010) Conformational optimization with natural degrees of freedom: a novel stochastic chain closure algorithm. J Comput Biol 17:993-1010
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Showing the most recent 10 out of 46 publications
